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AT2G47310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : flowering time control protein-related / FCA gamma-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
flowering time control protein-related / FCA gamma-related; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding;abscisic acid binding (TAIR:AT4G16280.4); Has 13219 Blast hits to 10590 proteins in 472 species: Archae - 0; Bacteria - 420; Metazoa - 8082; Fungi - 1429; Plants - 2128; Viruses - 0; Other Eukaryotes - 1160 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNTWeggNOG:KOG0144EMBL:AK229352EMBL:BT015132
EMBL:BT015799EMBL:CP002685EnsemblPlants:AT2G47310EnsemblPlants:AT2G47310.1
entrez:819344Gene3D:3.30.70.330GeneID:819344GO:GO:0000166
GO:GO:0003723Gramene:AT2G47310.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF382
HOGENOM:HOG000084673InterPro:IPR000504InterPro:IPR001202InterPro:IPR012677
InterPro:IPR031096KEGG:ath:AT2G47310OMA:KYYYNCVPANTHER:PTHR24012:SF382
Pfam:PF00076Pfam:PF00397Pfscan:PS50020Pfscan:PS50102
PhylomeDB:Q6AWW6PROSITE:PS01159PROSITE:PS50020PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_850472.1scanprosite:PS01159SMART:SM00360
SMART:SM00456SMR:Q6AWW6STRING:3702.AT2G47310.1SUPFAM:SSF51045
SUPFAM:SSF54928TAIR:AT2G47310UniGene:At.36378UniProt:Q6AWW6
Coordinates (TAIR10) chr2:+:19423791..19426846
Molecular Weight (calculated) 58369.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.86
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MERRAPNAFP GAPPPVPYYH NNYNNPPHHQ IHPPPPPHHH IAAVGFHKYP QNDNRDQRFN QPHYSGQQQN MIVDQSNNAP PPFPPSPCGG SSLRKRRSQS
101: ATDNADGSIA KLYVAPISKT ATEYDIRQVF EKYGNVTEII LPKDKMTGER AAYCFIKYKK VEEGNAAIAA LTEQFTFPGE MLPVKVRFAE AERERIGFAP
201: VQLPDNPKLY VRCLNKQTTK MEVNEVFSRY GIIEDIYMAL DDMKICRGYA FVQFSCKEMA LAAIKALNGL FTIRGSDQPL IVRFADPKKP RLGEQRSTFN
301: TPPAMQHFDP NWHSQPYPQW ENKEPAPPRV VQHHDFSSQP NHFPHQNTQA VSEVHKPLHQ DIPPANFEKH QKSETASVET RSDGQKISSH SNAFHEDQNT
401: VSSECDWSEH TCPNGNKYYF HCITCESTWE KPDEYSMYER WLKEQTRLQD EKIKSPPLNN ESQEAIENSE QVESDVLQQN GELQQPSLST ADQENNVVVY
501: PVTTLAVETT CS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)