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AT5G01030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3527)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G37930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH8AeggNOG:ENOG411183CEMBL:AL137189EMBL:AY096641
EMBL:BT002362EMBL:CP002688EnsemblPlants:AT5G01030EnsemblPlants:AT5G01030.1
EnsemblPlants:AT5G01030.2entrez:831730GeneID:831730Gramene:AT5G01030.1
Gramene:AT5G01030.2hmmpanther:PTHR31390hmmpanther:PTHR31390:SF0HOGENOM:HOG000153009
InterPro:IPR021916KEGG:ath:AT5G01030OMA:HVLSNKTPfam:PF12043
PhylomeDB:Q9LFD3PIR:T45943Proteomes:UP000006548RefSeq:NP_195723.1
RefSeq:NP_850748.1TAIR:AT5G01030UniGene:At.27863UniGene:At.27905
UniProt:Q9LFD3
Coordinates (TAIR10) chr5:+:10638..13003
Molecular Weight (calculated) 82296.70 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.70
Length 744 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKEGKASG TDNDNRVKTK RSSHSRRKEC VNKSLEHNDE LVKYMSKLPG YLQRIERGEE SVHQSNVLNV GVLDWESLQR WKHGRAKGGE ISGRSERKVS
101: TIATTSTSGV VVPNDSANRC KIDDQVHTCS NLGKVKASRD LQYSLEPQLA SRDSLNKQEI ATCSYKSSGR DHKGVEPRKS RRTHSNREST TGLSSEMGNS
201: AGSLFRDKET QKRAGEIHAK EARERAKECV EKLDGDEKII GDSEAGLTSE KQEFSNIFLL RSRKQSRSTL SGEPQISREV NRSLDFSDGI NSSFGLRSQI
301: PSSCPLSFDL ERDSEDMMLP LGTDLSGKRG GKRHSKTTSR IFDREFPEDE SRKERHPSPS KRFSFSFGRL SRNFSLKDIS AGQPLSSSED TIMSGSMRFD
401: GSVCPSQSSN PENQNTHCRS RVSPLRRFLD PLLKPKASES VLPSKARSSS SNPKPITNSN VPLQDEKKQD ASRTLAIFQL TIRNGIPLFQ FVVDDNSSSS
501: RSILGATMKS SDSSFKDDSV QYCTFYSVNE VKKKKSGSWL IHGHREKHCG FVYNIIGQMQ LGNSMSVDIS EQKSLITESV LFDESEQVKG RKEVAAVVIK
601: KKPVEGSYTS FEETSVIIPG GVHSFPEKGA PSPLISRWRS GGLCDCGGWD VGCKLHVLSN KTVLHKFNQS FTLFDQEVSE QDSSPALAMT ELKTGIYRVE
701: FGSFVSPLQA FFVCVTVLTC ASKAKTTGKS SSPMAPPLSP VGRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)