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AT1G27070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 5'-AMP-activated protein kinase-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
5'-AMP-activated protein kinase-related; BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT5G03420.1); Has 814 Blast hits to 789 proteins in 227 species: Archae - 3; Bacteria - 97; Metazoa - 231; Fungi - 191; Plants - 199; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUJQeggNOG:ENOG410XUJIEMBL:AC000348EMBL:CP002684
EnsemblPlants:AT1G27070EnsemblPlants:AT1G27070.1entrez:839596Gene3D:2.60.40.10
GeneID:839596GO:GO:0016301Gramene:AT1G27070.1hmmpanther:PTHR10343
hmmpanther:PTHR10343:SF47HOGENOM:HOG000083619InterPro:IPR013783InterPro:IPR014756
InterPro:IPR032640KEGG:ath:AT1G27070OMA:TSETWRTPfam:PF16561
PhylomeDB:Q9LFY0Proteomes:UP000006548RefSeq:NP_174027.3SMR:Q9LFY0
STRING:3702.AT1G27070.1SUPFAM:SSF81296TAIR:AT1G27070UniGene:At.41142
UniProt:Q9LFY0
Coordinates (TAIR10) chr1:-:9396945..9399225
Molecular Weight (calculated) 59201.80 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.64
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)