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AT5G06440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.711
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 155 Blast hits to 153 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 6; Plants - 101; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIBEeggNOG:ENOG41102WWEMBL:AY093055EMBL:AY128763
EMBL:CP002688EnsemblPlants:AT5G06440EnsemblPlants:AT5G06440.1entrez:830532
ExpressionAtlas:Q8RWI8Gene3D:3.30.530.20GeneID:830532Gramene:AT5G06440.1
hmmpanther:PTHR34560hmmpanther:PTHR34560:SF1HOGENOM:HOG000243859InterPro:IPR023393
PhylomeDB:Q8RWI8Proteomes:UP000006548RefSeq:NP_851032.1SUPFAM:SSF55961
TAIR:AT5G06440UniGene:At.32855UniProt:Q8RWI8
Coordinates (TAIR10) chr5:-:1964641..1966475
Molecular Weight (calculated) 46511.30 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.48
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MFVLQLKHDL EDCRVMYREG LDGSPFHTLL VEGYMDGPIH ECLCVSWEST LYKKWWPQYA FPPFRILKST CLQKVGVGEQ ICLARMKVPW PLTEREMILH
101: YFSFEYFKDG LVVILLNTIS DLNSIGVSST DIIIPESPDA VRMDLVGGFV LQKVTPQRSY FRTIGDMDIK LDLMPPSLMN FISRQLIGNG FRLYKKSVAS
201: VAKFDEDYSR ALTDPLYTKI RRALYSTDEA VEEEPKLETN EVNGVTLPKH EHENNGDASV NKPVHCRRTV PEIEEEEESE ESVYSEDGNE IAKTHVDMRR
301: RFCVSPEVEQ ALGTLDRVIF MVRNITPVPE TEELSPNRAD DQAKQVSVLE NIESVPQTQE SSSDFSEEEK REEDTGQNQG MLNKGKNSSL QRKRKARCFA
401: FRSWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)