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AT5G01780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.674
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate-dependent dioxygenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G01780EnsemblPlants:AT5G01780.1entrez:831672
ExpressionAtlas:F4KAV1Gene3D:2.60.120.590GeneID:831672GO:GO:0006281
GO:GO:0016491Gramene:AT5G01780.1hmmpanther:PTHR16557hmmpanther:PTHR16557:SF4
InterPro:IPR004574InterPro:IPR005123InterPro:IPR027450PANTHER:PTHR16557
Pfam:PF13532Pfscan:PS51471PRIDE:F4KAV1PROSITE:PS51471
ProteinModelPortal:F4KAV1Proteomes:UP000006548RefSeq:NP_195798.2SMR:F4KAV1
SUPFAM:SSF51197TAIR:AT5G01780UniGene:At.33505UniProt:F4KAV1
Coordinates (TAIR10) chr5:-:302365..304129
Molecular Weight (calculated) 43537.90 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.53
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNSIHRSFH LTSRHQIVLR LCSPSASRTI MSSSPHSPIP KTHRNLGCKN RRRRRASRFL HEESNGTTFE VGAGIGSPTS MVHFDSTNPS SSSKSSQSQN
101: LKIRKVRNHR NSGFKSRDQS PQRIKDPPPF DICSSVLERN DTSIKDWILA DETNRETVEV SNKHKVIRPG MVLLKDFLTP DIQVDIVKTC RELGVKPTGF
201: YQPGYSVGSK LHLQMMCLGR NWDPQTKYRK NTDIDSKAPE IPVTFNVLVE KAIREAHALI DRESGTEDAE RILPVMSPDI CIVNFYSETG RLGLHQDRDE
301: SEESIARGLP IVSFSIGDSA EFLYGEKRDV EEAQGVILES GDVLIFGGES RMIFHGVKSI IPNSAPMSLL NESKLRTGRL NLTFRHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)