suba logo
AT1G05160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:11722763 (2001): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome P450, family 88, subfamily A, polypeptide 3
Curator
Summary (TAIR10)
Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.
Computational
Description (TAIR10)
cytochrome P450, family 88, subfamily A, polypeptide 3 (CYP88A3); CONTAINS InterPro DOMAIN/s: Cytochrome P450, B-class (InterPro:IPR002397), Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ent-kaurenoic acid hydroxylase 2 (TAIR:AT2G32440.2); Has 36129 Blast hits to 36053 proteins in 1833 species: Archae - 82; Bacteria - 8530; Metazoa - 11168; Fungi - 6175; Plants - 8031; Viruses - 6; Other Eukaryotes - 2137 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05160-MONOMERBioCyc:MetaCyc:AT1G05160-MONOMERBioGrid:24546EC:1.14.13.79
eggNOG:COG2124eggNOG:KOG0157EMBL:AC000098EMBL:AF318500
EMBL:AK229009EMBL:CP002684EnsemblPlants:AT1G05160EnsemblPlants:AT1G05160.1
entrez:839311ExpressionAtlas:O23051Gene3D:1.10.630.10GeneID:839311
Genevisible:O23051GO:GO:0005506GO:GO:0005783GO:GO:0005789
GO:GO:0007275GO:GO:0009686GO:GO:0010268GO:GO:0016021
GO:GO:0016125GO:GO:0016132GO:GO:0016705GO:GO:0020037
GO:GO:0051777Gramene:AT1G05160.1gramene_pathway:1.14.13.79gramene_pathway:PWY-5034
gramene_plant_reactome:1119557gramene_plant_reactome:6873715gramene_plant_reactome:6875930gramene_plant_reactome:6876164
hmmpanther:PTHR24286hmmpanther:PTHR24286:SF67HOGENOM:HOG000237614InParanoid:O23051
InterPro:IPR001128InterPro:IPR002397InterPro:IPR017972KEGG:ath:AT1G05160
KO:K04123OMA:ANRDENKPaxDb:O23051Pfam:O23051
Pfam:PF00067PhylomeDB:O23051PIR:H86185PRIDE:O23051
PRINTS:PR00359PRINTS:PR00385PRO:PR:O23051PROSITE:PS00086
ProteinModelPortal:O23051Proteomes:UP000006548Reactome:R-ATH-211916Reactome:R-ATH-5365859
RefSeq:NP_172008.1scanprosite:PS00086SMR:O23051STRING:3702.AT1G05160.1
SUPFAM:SSF48264TAIR:AT1G05160tair10-symbols:ATKAO1tair10-symbols:CYP88A3
tair10-symbols:KAO1TMHMM:TMhelixUniGene:At.10414UniPathway:UPA00390
UniProt:O23051UniProt:Q0WPQ3
Coordinates (TAIR10) chr1:-:1487640..1489828
Molecular Weight (calculated) 56412.30 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.26
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETTSWIPV WFPLMVLGCF GLNWLVRKVN VWLYESSLGE NRHYLPPGDL GWPFIGNMLS FLRAFKTSDP DSFTRTLIKR YGPKGIYKAH MFGNPSIIVT
101: TSDTCRRVLT DDDAFKPGWP TSTMELIGRK SFVGISFEEH KRLRRLTAAP VNGHEALSTY IPYIEENVIT VLDKWTKMGE FEFLTHLRKL TFRIIMYIFL
201: SSESENVMDA LEREYTALNY GVRAMAVNIP GFAYHRALKA RKTLVAAFQS IVTERRNQRK QNILSNKKDM LDNLLNVKDE DGKTLDDEEI IDVLLMYLNA
301: GHESSGHTIM WATVFLQEHP EVLQRAKAEQ EMILKSRPEG QKGLSLKETR KMEFLSQVVD ETLRVITFSL TAFREAKTDV EMNGYLIPKG WKVLTWFRDV
401: HIDPEVFPDP RKFDPARWDN GFVPKAGAFL PFGAGSHLCP GNDLAKLEIS IFLHHFLLKY QVKRSNPECP VMYLPHTRPT DNCLARISYQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)