AT1G06150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1867129..1873194 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147421.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1322 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGYTLQQILR SICSNTDWNY AVFWKLNHHS PMVLTLEDVY CVNHERGLMP ESLHGGRHAH DPLGLAVAKM SYHVHSLGEG IVGQVAISGQ HQWIFSEYLN 0101: DSHSTLQVHN GWESQISAGI KTILIVAVGS CGVVQLGSLC KVEEDPALVT HIRHLFLALT DPLADHASNL MQCDINSPSD RPKIPSKCLH EASPDFSGEF 0201: DKAMDMEGLN IVSQNTSNRS NDLPYNFTPT YFHMERTAQV IGGLEAVQPS MFGSNDCVTS GFSVGVVDTK HKNQVDISDM SKVIYDEETG GYRYSRELDP 0301: NFQHYSRNHV RNSGGTSALA MESDRLKAGS SYPQLDSTVL TALKTDKDYS RRNEVFQPSE SQGSIFVKDT EHRQEEKSES SQLDALTASL CSFSGSELLE 0401: ALGPAFSKTS TDYGELAKFE SAAAIRRTND MSHSHLTFES SSENLLDAVV ASMSNGDGNV RREISSSRST QSLLTTAEMA QAEPFGHNKQ NIVSTVDSVI 0501: SQPPLADGLI QQNPSNICGA FSSIGFSSTC LSSSSDQFPT SLEIPKKNKK RAKPGESSRP RPRDRQLIQD RIKELRELVP NGSKCSIDSL LECTIKHMLF 0601: LQSVSQHADK LTKSASSKMQ HKDTGTLGIS STEQGSSWAV EIGGHLQVCS IMVENLDKEG VMLIEMLCEE CSHFLEIANV IRSLELIILR GTTEKQGEKT 0701: WICFVVEGQN NKVMHRMDIL WSLVQIFQPK ATNSLHLYRQ SQILYMNAFA NVHSLRVPSH HLRDFSASLS LAPPNLKKII KQCSTPKLLE SALAAMIKTS 0801: LNQDCRLMNQ FITACTSFKR LDLAVSTMTQ MQEPNVFVYN ALFKGFVTCS HPIRSLELYV RMLRDSVSPS SYTYSSLVKA SSFASRFGES LQAHIWKFGF 0901: GFHVKIQTTL IDFYSATGRI REARKVFDEM PERDDIAWTT MVSAYRRVLD MDSANSLANQ MSEKNEATSN CLINGYMGLG NLEQAESLFN QMPVKDIISW 1001: TTMIKGYSQN KRYREAIAVF YKMMEEGIIP DEVTMSTVIS ACAHLGVLEI GKEVHMYTLQ NGFVLDVYIG SALVDMYSKC GSLERALLVF FNLPKKNLFC 1101: WNSIIEGLAA HGFAQEALKM FAKMEMESVK PNAVTFVSVF TACTHAGLVD EGRRIYRSMI DDYSIVSNVE HYGGMVHLFS KAGLIYEALE LIGNMEFEPN 1201: AVIWGALLDG CRIHKNLVIA EIAFNKLMVL EPMNSGYYFL LVSMYAEQNR WRDVAEIRGR MRELGIEKIC PGTSSIRIDK RDHLFAAADK SHSASDEVCL 1301: LLDEIYDQMG LAGYVQETEN VY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)