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AT4G15090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FRS (FAR1 Related Sequences) transcription factor family
Curator
Summary (TAIR10)
Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.
Computational
Description (TAIR10)
FAR-RED IMPAIRED RESPONSE 1 (FAR1); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1639 Blast hits to 1460 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 107; Plants - 1519; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:12470eggNOG:ENOG410IF67eggNOG:ENOG410YB4AEMBL:AF159587
EMBL:AL161540EMBL:CP002687EMBL:Z97337EnsemblPlants:AT4G15090
EnsemblPlants:AT4G15090.1entrez:827173GeneID:827173Genevisible:Q9SWG3
GO:GO:0003700GO:GO:0005634GO:GO:0008270GO:GO:0009639
GO:GO:0010017GO:GO:0010018GO:GO:0010218GO:GO:0042753
GO:GO:0045893Gramene:AT4G15090.1hmmpanther:PTHR31669hmmpanther:PTHR31669:SF21
HOGENOM:HOG000090708InParanoid:Q9SWG3IntAct:Q9SWG3InterPro:IPR004330
InterPro:IPR006564InterPro:IPR007527InterPro:IPR018289InterPro:IPR031052
KEGG:ath:AT4G15090OMA:NLMEPPHPANTHER:PTHR31669PaxDb:Q9SWG3
Pfam:PF03101Pfam:PF04434Pfam:PF10551Pfam:Q9SWG3
Pfscan:PS50966PhylomeDB:Q9SWG3PIR:F71414PIR:T02124
PRIDE:Q9SWG3PRO:PR:Q9SWG3PROSITE:PS50966ProteinModelPortal:Q9SWG3
Proteomes:UP000006548RefSeq:NP_567455.4SMART:SM00575STRING:3702.AT4G15090.1
TAIR:AT4G15090tair10-symbols:FAR1UniGene:At.11570UniProt:Q9SWG3
Coordinates (TAIR10) chr4:+:8614806..8617870
Molecular Weight (calculated) 95454.30 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.56
Length 827 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLQENLVSD AGDDHMVDIV VEPHSNRDIG IVDEFNIGGD VGFSGDLDLE PRNGIDFDTH EAAYIFYQEY AKSMGFTTSI KNSRRSKKTK DFIDAKFACS
101: RYGVTPESES SGSSSRRSTV KKTDCKASMH VKRRPDGKWI IHEFVKDHNH ELLPALAYHF RIQRNVKLAE KNNIDILHAV SERTKKMYVE MSRQSGGYKN
201: IGSLLQTDVS SQVDKGRYLA LEEGDSQVLL EYFKRIKKEN PKFFYAIDLN EDQRLRNLFW ADAKSRDDYL SFNDVVSFDT TYVKFNDKLP LALFIGVNHH
301: SQPMLLGCAL VADESMETFV WLIKTWLRAM GGRAPKVILT DQDKFLMSAV SELLPNTRHC FALWHVLEKI PEYFSHVMKR HENFLLKFNK CIFRSWTDDE
401: FDMRWWKMVS QFGLENDEWL LWLHEHRQKW VPTFMSDVFL AGMSTSQRSE SVNSFFDKYI HKKITLKEFL RQYGVILQNR YEEESVADFD TCHKQPALKS
501: PSPWEKQMAT TYTHTIFKKF QVEVLGVVAC HPRKEKEDEN MATFRVQDCE KDDDFLVTWS KTKSELCCFC RMFEYKGFLC RHALMILQMC GFASIPPQYI
601: LKRWTKDAKS GVLAGEGADQ IQTRVQRYND LCSRATELSE EGCVSEENYN IALRTLVETL KNCVDMNNAR NNITESNSQL NNGTHEEENQ VMAGVKATKK
701: KTVYRKRKGQ QEASQMLESQ QSLQPMETIS SEAMDMNGYY GPQQNVQGLL NLMEPPHEGY YVDQRTIQGL GQLNSIAPAQ DSFFTNQQAM SGMVGQIDFR
801: PPPNFTYTLQ EEHLSSAQLP GSSSRQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)