AT4G15090.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : FRS (FAR1 Related Sequences) transcription factor family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
FAR-RED IMPAIRED RESPONSE 1 (FAR1); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1639 Blast hits to 1460 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 107; Plants - 1519; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:+:8614806..8617870 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 95454.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 827 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDLQENLVSD AGDDHMVDIV VEPHSNRDIG IVDEFNIGGD VGFSGDLDLE PRNGIDFDTH EAAYIFYQEY AKSMGFTTSI KNSRRSKKTK DFIDAKFACS 101: RYGVTPESES SGSSSRRSTV KKTDCKASMH VKRRPDGKWI IHEFVKDHNH ELLPALAYHF RIQRNVKLAE KNNIDILHAV SERTKKMYVE MSRQSGGYKN 201: IGSLLQTDVS SQVDKGRYLA LEEGDSQVLL EYFKRIKKEN PKFFYAIDLN EDQRLRNLFW ADAKSRDDYL SFNDVVSFDT TYVKFNDKLP LALFIGVNHH 301: SQPMLLGCAL VADESMETFV WLIKTWLRAM GGRAPKVILT DQDKFLMSAV SELLPNTRHC FALWHVLEKI PEYFSHVMKR HENFLLKFNK CIFRSWTDDE 401: FDMRWWKMVS QFGLENDEWL LWLHEHRQKW VPTFMSDVFL AGMSTSQRSE SVNSFFDKYI HKKITLKEFL RQYGVILQNR YEEESVADFD TCHKQPALKS 501: PSPWEKQMAT TYTHTIFKKF QVEVLGVVAC HPRKEKEDEN MATFRVQDCE KDDDFLVTWS KTKSELCCFC RMFEYKGFLC RHALMILQMC GFASIPPQYI 601: LKRWTKDAKS GVLAGEGADQ IQTRVQRYND LCSRATELSE EGCVSEENYN IALRTLVETL KNCVDMNNAR NNITESNSQL NNGTHEEENQ VMAGVKATKK 701: KTVYRKRKGQ QEASQMLESQ QSLQPMETIS SEAMDMNGYY GPQQNVQGLL NLMEPPHEGY YVDQRTIQGL GQLNSIAPAQ DSFFTNQQAM SGMVGQIDFR 801: PPPNFTYTLQ EEHLSSAQLP GSSSRQL |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)