AT3G17450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT dimerisation domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5972793..5975684 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100531.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||
| Length | 877 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPPGSIGVV DPGWEHGVAQ DQRKKKVKCN YCGKIVSGGI YRLKQHLARV SGEVTYCDKS PEEVCMRMKE NLVRSTKKLR QSEDNSGQSC SSFHQSNNDD 101: EADEEERRCW SIRSKGKLGL SDGSLLRSSG YIDPGWEHGI AQDERKKKVK CNYCNKIVSG GINRFKQHLA RIPGEVAPCK TAPEEVYVKI KENMKWHRAG 201: KRQNRPDDEM GALTFRTVSQ DPDQEEDRED HDFYPTSQDR LMLGNGRFSK DKRKSFDSTN MRSVSEAKTK RARMIPFQSP SSSKQRKLYS SCSNRVVSRK 301: DVTSSISKFL HHVGVPTEAA NSLYFQKMIE LIGMYGEGFV VPSSQLFSGR LLQEEMSTIK SYLREYRSSW VVTGCSIMAD TWTNTEGKKM ISFLVSCPRG 401: VYFHSSIDAT DIVEDALSLF KCLDKLVDDI GEENVVQVIT QNTAIFRSAG KLLEEKRKNL YWTPCAIHCT ELVLEDFSKL EFVSECLEKA QRITRFIYNQ 501: TWLLNLMKNE FTQGLDLLRP AVMRHASGFT TLQSLMDHKA SLRGLFQSDG WILSQTAAKS EEGREVEKMV LSAVFWKKVQ YVLKSVDPVM QVIHMINDGG 601: DRLSMPYAYG YMCCAKMAIK SIHSDDARKY GPFWRVIEYR WNPLFHHPLY VAAYFFNPAY KYRPDFMAQS EVVRGVNECI VRLEPDNTRR ITALMQIPDY 701: TCAKADFGTD IAIGTRTELD PSAWWQQHGI SCLELQRVAV RILSHTCSSV GCEPKWSVYD QVNSQCQSQF GKKSTKDLTY VHYNLRLREK QLKQRLHYED 801: EPPPTLNHAL LDRLLPDWLV TSEKEEEEAL HGEDRAEKED HEDDEEEEEK FYMESGNVDG EGEDNLDPYD DDLSDDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)