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AT3G12380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin-related protein 5
Curator
Summary (TAIR10)
Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.
Computational
Description (TAIR10)
actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 21592 Blast hits to 13553 proteins in 2425 species: Archae - 18; Bacteria - 280; Metazoa - 9176; Fungi - 4874; Plants - 2192; Viruses - 30; Other Eukaryotes - 5022 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ7KeggNOG:KOG0681EMBL:AC069474EMBL:AK318935
EMBL:AP002047EMBL:AY052346EMBL:BT001061EMBL:CP002686
EMBL:FJ850973EMBL:FJ850974EnsemblPlants:AT3G12380EnsemblPlants:AT3G12380.1
entrez:820416GeneID:820416Genevisible:Q940Z2GO:GO:0005654
GO:GO:0005737GO:GO:0006281GO:GO:0006355GO:GO:0010082
GO:GO:0031011GO:GO:0080036hmmpanther:PTHR11937hmmpanther:PTHR11937:SF16
HOGENOM:HOG000171615InParanoid:Q940Z2InterPro:IPR004000InterPro:IPR027664
iPTMnet:Q940Z2KEGG:ath:AT3G12380KO:K11672ncoils:Coil
OMA:CQFIGYDPANTHER:PTHR11937PANTHER:PTHR11937:SF16PaxDb:Q940Z2
Pfam:PF00022Pfam:Q940Z2PRIDE:Q940Z2PRO:PR:Q940Z2
ProteinModelPortal:Q940Z2Proteomes:UP000006548RefSeq:NP_001189870.1RefSeq:NP_566422.4
SMART:SM00268SMR:Q940Z2STRING:3702.AT3G12380.2SUPFAM:SSF53067
TAIR:AT3G12380tair10-symbols:ARP5tair10-symbols:ATARP5UniGene:At.17437
UniProt:Q940Z2
Coordinates (TAIR10) chr3:-:3938309..3941785
Molecular Weight (calculated) 83057.10 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.72
Length 724 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFVSRIRRQ SDYNTYPSSI PIVIDNGASY FRIGWAGETE PRVVFRNIVQ RPRHKATGET VTIVGDLDPS MMKYFDCTRS GPRSPFDSNV VYQFEIMEYI
101: LDYAFDRLGA NGSGIDHPIL ITECACNPVQ SRSKMAELLF ETYGVPAVAF GVDAAFSYKY NQLHGICKKD GIVLCPGFTT THSIPFVDGE PIYKGSSRTN
201: IGGYHVTDYL KQLLSLKYPF HSSRFTWEKA EDLKLEHCYI APDYASEIRL FQEGRKEAEE KTSYWQLPWI PPPTEVPPSE EEIARKAAIR EKQGQRLREM
301: AEAKRVSKIN DMENQLISLR FLLKQVDQVE EDDIPTFLSD TGYASRQELE STITKVTQSL RKARGEPKNE PAEYEENPDS LNNEKYPLMN VPDDILTPEQ
401: LKDKKRQMFL KTTAEGRLRA RQKRNEEELE KEKRNQLEEE RRRENPESYL EELQAQYKEV LERVEQKKRL KTNGSSNGNN KSGGIGRGER LSAAQRERMR
501: LLTTAAFDRG KGEDTFGSRD EDWQLYKLMS KDNDDDDEQP DSDEAELARL SSRLQEIDPT FVQKVEGELS QTSGEVPRVR PLTEEDYKIV IGIERFRCPE
601: ILFHPNLIGI DQVGLDEMAG TSIRRLPHDE KELEERLTSS ILMTGGCSLL PGMNERLECG IRMIRPCGSP INVVRAMDPV LDAWRGASAF AANLNFLGNA
701: FTKMDYDEKG EDWLRNYQIR YNYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)