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AT1G13260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : related to ABI3/VP1 1
Curator
Summary (TAIR10)
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational
Description (TAIR10)
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:23126eggNOG:ENOG410IIT9eggNOG:ENOG4110AU5EMBL:AB013886
EMBL:AC011810EMBL:AY063855EMBL:AY091291EMBL:CP002684
EnsemblPlants:AT1G13260EnsemblPlants:AT1G13260.1entrez:837886EvolutionaryTrace:Q9ZWM9
Gene3D:2.40.330.10Gene3D:3.30.730.10GeneID:837886Genevisible:Q9ZWM9
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009741GO:GO:0009873GO:GO:0009910GO:GO:0045892
GO:GO:0048366GO:GO:0048527Gramene:AT1G13260.1hmmpanther:PTHR31140
hmmpanther:PTHR31140:SF3HOGENOM:HOG000237484InterPro:IPR001471InterPro:IPR003340
InterPro:IPR015300InterPro:IPR016177KEGG:ath:AT1G13260KO:K09287
OMA:CKARSIGPaxDb:Q9ZWM9PDB:1WIDPDBsum:1WID
Pfam:PF00847Pfam:PF02362Pfam:Q9ZWM9Pfscan:PS50863
Pfscan:PS51032PhylomeDB:Q9ZWM9PIR:T51329PRIDE:Q9ZWM9
PRO:PR:Q9ZWM9PROSITE:PS50863PROSITE:PS51032ProteinModelPortal:Q9ZWM9
Proteomes:UP000006548RefSeq:NP_172784.1SMART:SM00380SMART:SM01019
SMR:Q9ZWM9STRING:3702.AT1G13260.1SUPFAM:SSF101936SUPFAM:SSF54171
TAIR:AT1G13260tair10-symbols:EDF4tair10-symbols:RAV1UniGene:At.20558
UniProt:Q9ZWM9
Coordinates (TAIR10) chr1:+:4542386..4543420
Molecular Weight (calculated) 38599.20 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.69
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)