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AT4G17500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene responsive element binding factor 1
Curator
Summary (TAIR10)
Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
ethylene responsive element binding factor 1 (ERF-1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 2 (TAIR:AT5G47220.1); Has 5773 Blast hits to 5650 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5761; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioGrid:12757eggNOG:ENOG410J07PeggNOG:ENOG410YJV7EMBL:AB008103
EMBL:AL161546EMBL:AY058174EMBL:AY062533EMBL:BT002578
EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17500EnsemblPlants:AT4G17500.1
entrez:827464EvolutionaryTrace:O80337Gene3D:3.30.730.10GeneID:827464
Genevisible:O80337GO:GO:0001944GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006952GO:GO:0009873
GO:GO:0010200GO:GO:0051301Gramene:AT4G17500.1hmmpanther:PTHR31190
hmmpanther:PTHR31190:SF30HOGENOM:HOG000239314InParanoid:O80337InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT4G17500KO:K09286MINT:MINT-8070094
OMA:CEVVEVTPaxDb:O80337PDB:1GCCPDB:2GCC
PDB:3GCCPDBsum:1GCCPDBsum:2GCCPDBsum:3GCC
Pfam:O80337Pfam:PF00847Pfscan:PS51032PhylomeDB:O80337
PIR:A85196PIR:T51988PRIDE:O80337PRINTS:PR00367
PRO:PR:O80337PROSITE:PS51032ProteinModelPortal:O80337Proteomes:UP000006548
RefSeq:NP_567530.4SMART:SM00380SMR:O80337STRING:3702.AT4G17500.1
SUPFAM:SSF54171TAIR:AT4G17500tair10-symbols:ATERF-1tair10-symbols:ERF-1
UniGene:At.23185UniGene:At.68141UniProt:O80337
Coordinates (TAIR10) chr4:+:9759405..9760211
Molecular Weight (calculated) 29191.30 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.49
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMTADSQSD YAFLESIRRH LLGESEPILS ESTASSVTQS CVTGQSIKPV YGRNPSFSKL YPCFTESWGD LPLKENDSED MLVYGILNDA FHGGWEPSSS
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)