AT2G27310.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box family protein; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G36090.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:11683954..11684967 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 38606.80 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.92 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATVDVINGD SISTLHSDII QTQILTRLDG PTLASTATTS SYLQTLCTEE KLWQELSIDT WPSINDPRVV QAISSFPSGY RSFFADSYPF TEHTWQSEKH 101: DPPTGLISAV DLYYRGEIIY SKVQEMETEK GKSGWFLSSP FRVDILDPKE SVQTRIRYPG GDYEAWVKDM EESMKLNWIL IDPIKKRAAN ISSRKAVSAR 201: RNWLTGDLEI RFSTVVTAEA AEVAAVVSCG SAEAWKEVDE EVGGEIHVRD VRLQVEDIEG KCMKGRDSLV ILQGLLDGKR SCKDDEERRA KERYEEYVRM 301: KIQWRENKER REKAQDTICM IFGFSMFVLL WSFILLR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)