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AT2G27310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G36090.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJW9eggNOG:ENOG410YK80EMBL:AC006233EMBL:AF370592
EMBL:CP002685EnsemblPlants:AT2G27310EnsemblPlants:AT2G27310.1entrez:817274
GeneID:817274Genevisible:Q9XIN8Gramene:AT2G27310.1hmmpanther:PTHR33736
hmmpanther:PTHR33736:SF3HOGENOM:HOG000239135InParanoid:Q9XIN8InterPro:IPR001810
KEGG:ath:AT2G27310OMA:LGCALRRPaxDb:Q9XIN8Pfam:Q9XIN8
PhylomeDB:Q9XIN8PIR:D84671PRIDE:Q9XIN8PRO:PR:Q9XIN8
ProteinModelPortal:Q9XIN8Proteomes:UP000006548RefSeq:NP_180299.1STRING:3702.AT2G27310.1
SUPFAM:SSF81383TAIR:AT2G27310TMHMM:TMhelixUniGene:At.13633
UniProt:Q9XIN8
Coordinates (TAIR10) chr2:-:11683954..11684967
Molecular Weight (calculated) 38606.80 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.41
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVDVINGD SISTLHSDII QTQILTRLDG PTLASTATTS SYLQTLCTEE KLWQELSIDT WPSINDPRVV QAISSFPSGY RSFFADSYPF TEHTWQSEKH
101: DPPTGLISAV DLYYRGEIIY SKVQEMETEK GKSGWFLSSP FRVDILDPKE SVQTRIRYPG GDYEAWVKDM EESMKLNWIL IDPIKKRAAN ISSRKAVSAR
201: RNWLTGDLEI RFSTVVTAEA AEVAAVVSCG SAEAWKEVDE EVGGEIHVRD VRLQVEDIEG KCMKGRDSLV ILQGLLDGKR SCKDDEERRA KERYEEYVRM
301: KIQWRENKER REKAQDTICM IFGFSMFVLL WSFILLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)