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AT1G28480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.
Computational
Description (TAIR10)
GRX480; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G03850.2); Has 774 Blast hits to 772 proteins in 85 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 18; Plants - 684; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:24983eggNOG:COG0695eggNOG:KOG1752EMBL:AC010155
EMBL:AF325030EMBL:AK229369EMBL:BT029336EMBL:CP002684
EMBL:FJ611918EnsemblPlants:AT1G28480EnsemblPlants:AT1G28480.1entrez:839748
Gene3D:3.40.30.10GeneID:839748Genevisible:Q9SGP6GO:GO:0005634
GO:GO:0005737GO:GO:0009055GO:GO:0009751GO:GO:0009863
GO:GO:0009867GO:GO:0015035GO:GO:0045454Gramene:AT1G28480.1
hmmpanther:PTHR10168hmmpanther:PTHR10168:SF69HOGENOM:HOG000095204InParanoid:Q9SGP6
IntAct:Q9SGP6InterPro:IPR002109InterPro:IPR011905InterPro:IPR012336
KEGG:ath:AT1G28480MINT:MINT-8059173OMA:MATHITGPaxDb:Q9SGP6
Pfam:PF00462Pfam:Q9SGP6Pfscan:PS51354PhylomeDB:Q9SGP6
PIR:H86410PRO:PR:Q9SGP6PROSITE:PS51354ProteinModelPortal:Q9SGP6
Proteomes:UP000006548RefSeq:NP_174170.1SMR:Q9SGP6STRING:3702.AT1G28480.1
SUPFAM:SSF52833TAIR:AT1G28480tair10-symbols:GRX480tair10-symbols:roxy19
TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.11829UniProt:Q9SGP6
Coordinates (TAIR10) chr1:-:10013634..10014047
Molecular Weight (calculated) 14759.20 Da
IEP (calculated) 5.77
GRAVY (calculated) 0.17
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)