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AT3G25780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : allene oxide cyclase 3
Curator
Summary (TAIR10)
Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.
Computational
Description (TAIR10)
allene oxide cyclase 3 (AOC3); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: response to salt stress, response to fungus, jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 2 (TAIR:AT3G25770.1); Has 202 Blast hits to 202 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHTAeggNOG:ENOG4111X07EMBL:AK229247EnsemblPlants:AT3G25780
EnsemblPlants:AT3G25780.1entrez:822169ExpressionAtlas:Q0WP37GeneID:822169
GO:GO:0009507GO:GO:0016853Gramene:AT3G25780.1gramene_pathway:5.3.99.6
gramene_pathway:PWY-735gramene_plant_reactome:1119332gramene_plant_reactome:6873863hmmpanther:PTHR31843
hmmpanther:PTHR31843:SF2InterPro:IPR009410KEGG:00592+5.3.99.6KEGG:ath:AT3G25780
KO:K10525OMA:RAFFWNWPaxDb:Q0WP37Pfam:PF06351
Pfam:Q9LS01PhylomeDB:Q0WP37PRIDE:Q0WP37ProDom:PD329160
ProteinModelPortal:Q0WP37RefSeq:NP_566777.1SMR:Q0WP37STRING:3702.AT3G25780.1
SUPFAM:SSF141493SwissPalm:Q9LS01TAIR:AT3G25780tair10-symbols:AOC3
UniGene:At.27910UniProt:Q0WP37UniProt:Q9LS01
Coordinates (TAIR10) chr3:+:9409362..9410409
Molecular Weight (calculated) 28399.60 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.36
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSAAMSL ESISMTTLNN LSRNHQSHRS SLLGFSRSFQ NLGISSNGPD FSSRSRSTTS KNLNVTRAFF WNWGKKTENS RPSKIQELNV YELNEGDRNS
101: PAVLKLGKKP TELCLGDLVP FTNKLYTGDL KKRVGITAGL CVLIQHVPEK SGDRFEASYS FYFGDYGHLS VQGQYLTYED TFLAVTGGSG IFEGAYGQVK
201: LRQLVYPTKL FYTFYLKGLA NDLPLELTGT AVTPSKDVKP APEAKAMEPS GVISNFTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)