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AT1G72520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAT/LH2 domain-containing lipoxygenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase 3 (TAIR:AT1G17420.1); Has 1471 Blast hits to 1433 proteins in 182 species: Archae - 0; Bacteria - 79; Metazoa - 528; Fungi - 49; Plants - 786; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
BRENDA:1.13.11.12EC:1.13.11.12eggNOG:ENOG410IEKPeggNOG:ENOG410YN4N
EMBL:AC010926EMBL:AC016529EMBL:AJ302042EMBL:AY056166
EMBL:AY091193EMBL:CP002684EnsemblPlants:AT1G72520EnsemblPlants:AT1G72520.1
entrez:843584Gene3D:2.60.60.20Gene3D:4.10.372.10GeneID:843584
Genevisible:Q9FNX8GO:GO:0009507GO:GO:0009555GO:GO:0009611
GO:GO:0009617GO:GO:0009901GO:GO:0010193GO:GO:0016165
GO:GO:0031408GO:GO:0034440GO:GO:0046872GO:GO:0048653
GO:GO:0080086Gramene:AT1G72520.1gramene_pathway:1.13.11.12gramene_pathway:PWY-5410
gramene_pathway:PWY-735hmmpanther:PTHR11771hmmpanther:PTHR11771:SF38HOGENOM:HOG000230469
InParanoid:Q9FNX8InterPro:IPR000907InterPro:IPR001024InterPro:IPR001246
InterPro:IPR013819InterPro:IPR020833InterPro:IPR020834InterPro:IPR027433
KEGG:ath:AT1G72520KO:K00454ncoils:CoilOMA:ANFGEID
PANTHER:PTHR11771PaxDb:Q9FNX8Pfam:PF00305Pfam:PF01477
Pfam:Q9FNX8Pfscan:PS50095Pfscan:PS51393PhylomeDB:Q9FNX8
PIR:E96749PRIDE:Q9FNX8PRINTS:PR00087PRINTS:PR00468
PRO:PR:Q9FNX8PROSITE:PS00081PROSITE:PS00711PROSITE:PS50095
PROSITE:PS51393ProteinModelPortal:Q9FNX8Proteomes:UP000006548Reactome:R-ATH-2142691
Reactome:R-ATH-2142696Reactome:R-ATH-2142700Reactome:R-ATH-2142712Reactome:R-ATH-2142770
RefSeq:NP_177396.1scanprosite:PS00081scanprosite:PS00711SMART:SM00308
SMR:Q9FNX8STRING:3702.AT1G72520.1SUPFAM:SSF48484SUPFAM:SSF49723
TAIR:AT1G72520tair10-symbols:LOX4UniGene:At.18241UniGene:At.67292
UniPathway:UPA00382UniProt:Q9FNX8
Coordinates (TAIR10) chr1:+:27308611..27312589
Molecular Weight (calculated) 104820.00 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.45
Length 926 amino acids
Sequence (TAIR10)
(BLAST)
001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)