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AT1G17380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : jasmonate-zim-domain protein 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
jasmonate-zim-domain protein 5 (JAZ5); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1); Has 301 Blast hits to 296 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:23550DIP:DIP-53275NeggNOG:ENOG410JT08eggNOG:ENOG41108B8
EMBL:AC007843EMBL:AC022492EMBL:AY087653EMBL:BT000430
EMBL:BT002543EMBL:CP002684EnsemblPlants:AT1G17380EnsemblPlants:AT1G17380.1
entrez:838310GeneID:838310Genevisible:Q9LDU5GO:GO:0003714
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006952
GO:GO:0009611GO:GO:0009753GO:GO:0031347GO:GO:1903507
GO:GO:2000022Gramene:AT1G17380.1hmmpanther:PTHR33077hmmpanther:PTHR33077:SF13
HOGENOM:HOG000239787InParanoid:Q9LDU5IntAct:Q9LDU5InterPro:IPR010399
InterPro:IPR018467KEGG:ath:AT1G17380KO:K13464OMA:QKVINIC
PaxDb:Q9LDU5Pfam:PF06200Pfam:PF09425Pfam:Q9LDU5
Pfscan:PS51320PhylomeDB:Q9LDU5PRIDE:Q9LDU5PRO:PR:Q9LDU5
PROSITE:PS51320ProteinModelPortal:Q9LDU5Proteomes:UP000006548RefSeq:NP_564019.1
SMART:SM00979STRING:3702.AT1G17380.1TAIR:AT1G17380tair10-symbols:JAZ5
tair10-symbols:TIFY11AUniGene:At.27828UniProt:Q9LDU5
Coordinates (TAIR10) chr1:-:5955654..5957070
Molecular Weight (calculated) 30344.60 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.96
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)