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AT3G23250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 15
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 15 (MYB15); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 14 (TAIR:AT2G31180.1); Has 9082 Blast hits to 8389 proteins in 525 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 506; Plants - 5968; Viruses - 4; Other Eukaryotes - 1801 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB025608EMBL:AK176617
EMBL:AK176693EMBL:AY550296EMBL:BT026046EMBL:CP002686
EnsemblPlants:AT3G23250EnsemblPlants:AT3G23250.1entrez:821904ExpressionAtlas:Q9LTC4
Gene3D:1.10.10.60GeneID:821904GO:GO:0003677GO:GO:0003700
GO:GO:0006355GO:GO:0009651GO:GO:0009723GO:GO:0009733
GO:GO:0009753GO:GO:0010200GO:GO:0046686Gramene:AT3G23250.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF497HOGENOM:HOG000237600InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930OMA:DYQPAKPPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9LTC4PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_188966.1SMART:SM00717SMR:Q9LTC4STRING:3702.AT3G23250.1
SUPFAM:SSF46689TAIR:AT3G23250tair10-symbols:ATMYB15tair10-symbols:ATY19
tair10-symbols:MYB15UniGene:At.5348UniProt:Q9LTC4
Coordinates (TAIR10) chr3:+:8309492..8310624
Molecular Weight (calculated) 32043.40 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.70
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)