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AT5G49520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 48
Curator
Summary (TAIR10)
Encodes WRKY48, a member of the WRKY Transcription Factor. WRKY48 is a stress- and pathogen-induced transcriptional activator that represses plant basal defense.
Computational
Description (TAIR10)
WRKY DNA-binding protein 48 (WRKY48); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 23 (TAIR:AT2G47260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY30eggNOG:ENOG410YJVPEMBL:AB023033EMBL:AF442397
EMBL:AY063870EMBL:AY091224EMBL:CP002688EnsemblPlants:AT5G49520
EnsemblPlants:AT5G49520.1entrez:835012Gene3D:2.20.25.80GeneID:835012
Genevisible:Q9FGZ4GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009617GO:GO:0010200GO:GO:0042742
GO:GO:0043565GO:GO:0045893Gramene:AT5G49520.1hmmpanther:PTHR31221
hmmpanther:PTHR31221:SF13HOGENOM:HOG000154862InParanoid:Q9FGZ4InterPro:IPR003657
KEGG:ath:AT5G49520ncoils:CoilOMA:FPGFGYDPaxDb:Q9FGZ4
Pfam:PF03106Pfam:Q9FGZ4Pfscan:PS50811PRIDE:Q9FGZ4
PRO:PR:Q9FGZ4PROSITE:PS50811ProteinModelPortal:Q9FGZ4Proteomes:UP000006548
RefSeq:NP_199763.1SMART:SM00774SMR:Q9FGZ4STRING:3702.AT5G49520.1
SUPFAM:0050605SUPFAM:SSF118290TAIR:AT5G49520tair10-symbols:ATWRKY48
tair10-symbols:WRKY48UniGene:At.27170UniProt:Q9FGZ4
Coordinates (TAIR10) chr5:+:20090890..20092867
Molecular Weight (calculated) 44727.90 Da
IEP (calculated) 6.51
GRAVY (calculated) -1.08
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)