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AT1G68840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : related to ABI3/VP1 2
Curator
Summary (TAIR10)
Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)
Computational
Description (TAIR10)
related to ABI3/VP1 2 (RAV2); FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2/B3 transcription factor family protein (TAIR:AT1G25560.1); Has 6747 Blast hits to 6417 proteins in 277 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6717; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:28437DIP:DIP-59694NeggNOG:ENOG410IIT9eggNOG:ENOG4110AU5
EMBL:AB013887EMBL:AC011665EMBL:AC011914EMBL:AF003101
EMBL:AF360312EMBL:AY056361EMBL:AY085908EMBL:CP002684
EnsemblPlants:AT1G68840EnsemblPlants:AT1G68840.1EnsemblPlants:AT1G68840.2entrez:843216
Gene3D:2.40.330.10Gene3D:3.30.730.10GeneID:843216Genevisible:P82280
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873GO:GO:0045892Gramene:AT1G68840.1Gramene:AT1G68840.2
hmmpanther:PTHR31140hmmpanther:PTHR31140:SF3HOGENOM:HOG000237484InParanoid:P82280
InterPro:IPR001471InterPro:IPR003340InterPro:IPR015300InterPro:IPR016177
iPTMnet:P82280KEGG:ath:AT1G68840KO:K09287OMA:MDSSCID
PaxDb:P82280Pfam:P82280Pfam:PF00847Pfam:PF02362
Pfscan:PS50863Pfscan:PS51032PhylomeDB:P82280PIR:T51330
PRIDE:P82280PRO:PR:P82280PROSITE:PS50863PROSITE:PS51032
ProteinModelPortal:P82280Proteomes:UP000006548RefSeq:NP_001185352.1RefSeq:NP_564947.1
SMART:SM00380SMART:SM01019SMR:P82280STRING:3702.AT1G68840.1
SUPFAM:SSF101936SUPFAM:SSF54171TAIR:AT1G68840tair10-symbols:AtRAV2
tair10-symbols:EDF2tair10-symbols:RAP2.8tair10-symbols:RAV2tair10-symbols:TEM2
UniGene:At.25344UniProt:P82280
Coordinates (TAIR10) chr1:+:25880442..25881500
Molecular Weight (calculated) 39494.90 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.51
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)