suba logo
AT4G01250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY family transcription factor
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-e
Computational
Description (TAIR10)
WRKY22; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23550.1); Has 3274 Blast hits to 2836 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 3256; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVI3eggNOG:ENOG410YMDWEMBL:AF007269EMBL:AF442392
EMBL:AL161491EMBL:AY045909EMBL:AY079404EMBL:CP002687
EnsemblPlants:AT4G01250EnsemblPlants:AT4G01250.1entrez:827896Gene3D:2.20.25.80
GeneID:827896Genevisible:O04609GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006952GO:GO:0010150GO:GO:0010200
GO:GO:0043565Gramene:AT4G01250.1hmmpanther:PTHR32096hmmpanther:PTHR32096:SF31
HOGENOM:HOG000241620InParanoid:O04609InterPro:IPR003657KEGG:ath:AT4G01250
KO:K13425OMA:HKKVCHVPaxDb:O04609Pfam:O04609
Pfam:PF03106Pfscan:PS50811PhylomeDB:O04609PIR:T01719
PRIDE:O04609PRO:PR:O04609PROSITE:PS50811ProteinModelPortal:O04609
Proteomes:UP000006548RefSeq:NP_192034.1SMART:SM00774SMR:O04609
STRING:3702.AT4G01250.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT4G01250
tair10-symbols:AtWRKY22tair10-symbols:WRKY22UniGene:At.3803UniProt:O04609
Coordinates (TAIR10) chr4:-:522839..524129
Molecular Weight (calculated) 32257.10 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.56
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MADDWDLHAV VRGCSAVSSS ATTTVYSPGV SSHTNPIFTV GRQSNAVSFG EIRDLYTPFT QESVVSSFSC INYPEEPRKP QNQKRPLSLS ASSGSVTSKP
101: SGSNTSRSKR RKIQHKKVCH VAAEALNSDV WAWRKYGQKP IKGSPYPRGY YRCSTSKGCL ARKQVERNRS DPKMFIVTYT AEHNHPAPTH RNSLAGSTRQ
201: KPSDQQTSKS PTTTIATYSS SPVTSADEFV LPVEDHLAVG DLDGEEDLLS LSDTVVSDDF FDGLEEFAAG DSFSGNSAPA SFDLSWVVNS AATTTGGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)