AT1G27100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin cross-linking protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin cross-linking protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF569) (TAIR:AT1G69890.1); Has 362 Blast hits to 223 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 10; Plants - 341; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9407557..9411074 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57687.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELFTKGNNV KLRSHLDKFL VADDDQETIR QSRKGDARRA VWTVEPVVDK PNLIRLKSSH GTYLTASNKP LLLGMTGEKV TQTASFNKLM DWQTQWEPER 101: DGFQVKLKSW CGKWMRANGG TPPWRNSVTH DEPHTSKTKN WLIWDVITID GSDLENMSDG DESSVSSPVG SEFGSEPGSP VSARSTKSSI SRFASLGLST 201: SPRWSSKPKS TASSFNQKET PVSVSAMEFF QKAKAIRMRN SHNKYLTADD DEETVTQNRN GSTKNARWTV EPVRDSFHVI RLKSCYGKYL TASNERFLLG 301: ATGKKVIQLK LSRVDSSVEW EPLREGSKIK LRTRSGNYLR GNGGLPPWRN SVTHDVPHLS ATQDSISWDV DVVEILTDSE FKTESAKAPP PKTTSPPPHR 401: RPTSSPLSAE SPRTSSSLSD RSDSDSVESP PKSDGRTIYY HVADEEGHVE DETTVGYAFT FKGNSVAELT QTLREETCME DAVVCTRSPL NGKLFPLRLQ 501: LPPNNGTLHV ILLPSSASL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)