suba logo
AT1G73540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 21
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 21 (NUDT21); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 4 (TAIR:AT1G18300.1); Has 1276 Blast hits to 1275 proteins in 388 species: Archae - 3; Bacteria - 524; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G73540-MONOMEREC:3.6.1.-eggNOG:ENOG410ISY6eggNOG:ENOG4111I7R
EMBL:AC012396EMBL:AY072369EMBL:BT002080EMBL:CP002684
EnsemblPlants:AT1G73540EnsemblPlants:AT1G73540.1entrez:843688Gene3D:3.90.79.10
GeneID:843688Genevisible:Q8VY81GO:GO:0009507GO:GO:0016787
GO:GO:0046872Gramene:AT1G73540.1hmmpanther:PTHR12629hmmpanther:PTHR12629:SF15
HOGENOM:HOG000165198InParanoid:Q8VY81InterPro:IPR000086InterPro:IPR015797
InterPro:IPR020084KEGG:ath:AT1G73540KO:K07766OMA:ISAQKKG
PaxDb:Q8VY81Pfam:PF00293Pfam:Q8VY81Pfscan:PS51462
PhylomeDB:Q8VY81PIR:B96762PRIDE:Q8VY81PRO:PR:Q8VY81
PROSITE:PS00893PROSITE:PS51462ProteinModelPortal:Q8VY81Proteomes:UP000006548
RefSeq:NP_177495.2scanprosite:PS00893SMR:Q8VY81STRING:3702.AT1G73540.1
SUPFAM:SSF55811TAIR:AT1G73540tair10-symbols:atnudt21tair10-symbols:NUDT21
UniGene:At.34983UniProt:Q8VY81
Coordinates (TAIR10) chr1:-:27645880..27646571
Molecular Weight (calculated) 22637.30 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.46
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MISLFISNFS NLSNLSPTFD NMNMNIPSKK IVPVPTPSEK VVSLVSRTGR DLQRYNTAGY RQVVGCVPYR YKKHGGGEIE VLLISAQKKG KGMLLPKGGW
101: EIDESIEEAA LRETIEEAGV TGQLEESLGK WQYKSKRHTM IHDGHMFPLL VSQQFEIWPE SEFRQRKWVS LSEAIELCQN SWMREALEAF INRKCQTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)