suba logo
AT1G18300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.895
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 4 (NUDT4); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, root, leaf; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 21 (TAIR:AT1G73540.1); Has 1264 Blast hits to 1263 proteins in 383 species: Archae - 1; Bacteria - 506; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G18300-MONOMEREC:3.6.1.-EC:3.6.1.13EC:3.6.1.22
eggNOG:ENOG410ISY6eggNOG:ENOG4111I7REMBL:AC013354EMBL:AC069551
EMBL:AK227367EMBL:BT003060EMBL:CP002684EnsemblPlants:AT1G18300
EnsemblPlants:AT1G18300.1entrez:838410Gene3D:3.90.79.10GeneID:838410
GO:GO:0000210GO:GO:0046872GO:GO:0047631Gramene:AT1G18300.1
hmmpanther:PTHR12629hmmpanther:PTHR12629:SF15HOGENOM:HOG000165198InParanoid:Q9LE73
InterPro:IPR000086InterPro:IPR015797InterPro:IPR020084KEGG:ath:AT1G18300
OMA:DGCPHWWPaxDb:Q9LE73Pfam:PF00293Pfam:Q9LE73
Pfscan:PS51462PhylomeDB:Q9LE73PRIDE:Q9LE73PRO:PR:Q9LE73
PROSITE:PS00893PROSITE:PS51462ProteinModelPortal:Q9LE73Proteomes:UP000006548
RefSeq:NP_173266.1scanprosite:PS00893SMR:Q9LE73STRING:3702.AT1G18300.1
SUPFAM:SSF55811TAIR:AT1G18300tair10-symbols:atnudt4tair10-symbols:NUDT4
UniGene:At.22732UniProt:Q9LE73
Coordinates (TAIR10) chr1:+:6299841..6300799
Molecular Weight (calculated) 23702.20 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.42
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGFSVSLFV SNLSNVASYL SPIFENIPST KVVPAQIEKV VSLVSRTGRD LQRYDHAGYR QVVGCVPYRY KKQEVNGVET QVIQVLLVSA QKGKGMLFPK
101: GGWETDESME EAALRETIEE AGVTGELEEK LGKWQYKSKR HSIIHDGYMF ALLVSQEFER WPEAEMRQRR WVSLDEAREV CQNWWMREAL EAFINLKCLA
201: DDDESGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)