AT1G18740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF793) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G74450.1); Has 167 Blast hits to 164 proteins in 20 species: Archae - 3; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6464125..6465273 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43543.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.93 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPATDFQGSF GRSLLSLRRD QVDSSTVVSG SSSHHEPSTM EVELDSFQRQ VAEKFIDLNA SSNDLLSLEW IGKLLDSFLC CQEEFRAIVF NHRSQISKSP 101: MDRLISDYFE RSIKALDVCN AIRDGIEQIR QWEKLADIVI SALDSHRPIG EGQLRRAKKA LIDLAIGMLD EKDHPSGTNL AHRNRSFGRV KDSHHRSIGH 201: FRSLSWSVSR SWSASKQLQA LASNLATPRP NDVVASNGLA VPVYTMTSVL LFVMWVLVAA IPCQDRGLQV NFFVPRHFQW AAPVMSLHDK IVEESKRRDR 301: KNCCGLLKEI DRIEKSSRLM NELIDSIHFP LNDDKEVEVK QRVDELVQVR EALRNGLDPF ERKVREVFHR IVRSRTESLD SL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)