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AT1G74930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
ORA47; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G19210.1); Has 5510 Blast hits to 5399 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5503; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:29051eggNOG:ENOG410IYYJeggNOG:ENOG410YNX4EMBL:AC008263
EMBL:AC013258EMBL:AY128309EMBL:BT003348EMBL:CP002684
EnsemblPlants:AT1G74930EnsemblPlants:AT1G74930.1entrez:843832Gene3D:3.30.730.10
GeneID:843832Genevisible:Q9S7L5GO:GO:0001944GO:GO:0002213
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009611GO:GO:0009873GO:GO:0051301Gramene:AT1G74930.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF34HOGENOM:HOG000237624InParanoid:Q9S7L5
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G74930OMA:EDYGGES
PaxDb:Q9S7L5Pfam:PF00847Pfam:Q9S7L5Pfscan:PS51032
PhylomeDB:Q9S7L5PIR:A96779PRINTS:PR00367PRO:PR:Q9S7L5
PROSITE:PS51032ProteinModelPortal:Q9S7L5Proteomes:UP000006548RefSeq:NP_177631.1
SMART:SM00380SMR:Q9S7L5STRING:3702.AT1G74930.1SUPFAM:SSF54171
TAIR:AT1G74930tair10-symbols:ORA47UniGene:At.34825UniProt:Q9S7L5
Coordinates (TAIR10) chr1:+:28144239..28144826
Molecular Weight (calculated) 21899.50 Da
IEP (calculated) 4.50
GRAVY (calculated) -0.56
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKQAMKEEE KKRNTAMQSK YKGVRKRKWG KWVSEIRLPH SRERIWLGSY DTPEKAARAF DAAQFCLRGG DANFNFPNNP PSISVEKSLT PPEIQEAAAR
101: FANTFQDIVK GEEESGLVPG SEIRPESPST SASVATSTVD YDFSFLDLLP MNFGFDSFSD DFSGFSGGDR FTEILPIEDY GGESLLDESL ILWDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)