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AT1G66400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin like 23
Curator
Summary (TAIR10)
Encodes a calmodulin-like protein. Regulates nitric oxide levels and transition to flowering.
Computational
Description (TAIR10)
calmodulin like 23 (CML23); FUNCTIONS IN: calcium ion binding; INVOLVED IN: regulation of flower development, regulation of nitric oxide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G37770.1); Has 30871 Blast hits to 18969 proteins in 1622 species: Archae - 1; Bacteria - 165; Metazoa - 12615; Fungi - 7465; Plants - 6190; Viruses - 4; Other Eukaryotes - 4431 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AC020665EMBL:AY063853
EMBL:AY088814EMBL:AY117325EMBL:CP002684EnsemblPlants:AT1G66400
EnsemblPlants:AT1G66400.1entrez:842958Gene3D:1.10.238.10GeneID:842958
Genevisible:Q9C8Y1GO:GO:0005509GO:GO:0009909GO:GO:0080164
Gramene:AT1G66400.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF573HOGENOM:HOG000233018
InParanoid:Q9C8Y1InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G66400KO:K13448OMA:NCLGSMEPaxDb:Q9C8Y1
Pfam:PF13499Pfam:Q9C8Y1Pfscan:PS50222PhylomeDB:Q9C8Y1
PIR:D96689PRIDE:Q9C8Y1PRO:PR:Q9C8Y1PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9C8Y1Proteomes:UP000006548RefSeq:NP_564874.1
scanprosite:PS00018SMART:SM00054SMR:Q9C8Y1STRING:3702.AT1G66400.1
SUPFAM:SSF47473TAIR:AT1G66400tair10-symbols:CML23UniGene:At.27176
UniProt:Q9C8Y1
Coordinates (TAIR10) chr1:-:24770856..24771329
Molecular Weight (calculated) 17654.80 Da
IEP (calculated) 4.36
GRAVY (calculated) -0.56
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKNVSRNCL GSMEDIKKVF QRFDKNNDGK ISIDELKDVI GALSPNASQE ETKAMMKEFD LDGNGFIDLD EFVALFQISD QSSNNSAIRD LKEAFDLYDL
101: DRNGRISANE LHSVMKNLGE KCSIQDCQRM INKVDSDGDG CVDFEEFKKM MMINGSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)