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AT2G43290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.834
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Encodes calmodulin-like MSS3.
Computational
Description (TAIR10)
multicopy suppressors of snf4 deficiency in yeast 3 (MSS3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G59440.1); Has 26796 Blast hits to 17896 proteins in 1618 species: Archae - 9; Bacteria - 273; Metazoa - 11544; Fungi - 5684; Plants - 5303; Viruses - 2; Other Eukaryotes - 3981 (source: NCBI BLink).
Protein Annotations
BioGrid:4268eggNOG:COG5126eggNOG:KOG0027EMBL:AC002335
EMBL:AC004450EMBL:AF250344EMBL:AY062815EMBL:AY081574
EMBL:AY087087EMBL:CP002685EnsemblPlants:AT2G43290EnsemblPlants:AT2G43290.1
entrez:818931Gene3D:1.10.238.10GeneID:818931Genevisible:O22845
GO:GO:0005509Gramene:AT2G43290.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF578
HOGENOM:HOG000233018InParanoid:O22845InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247iPTMnet:O22845KEGG:ath:AT2G43290KO:K13448
OMA:GMIDFQEPaxDb:O22845Pfam:O22845Pfam:PF13499
Pfscan:PS50222PhylomeDB:O22845PIR:D84864PRIDE:O22845
PRO:PR:O22845PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:O22845
Proteomes:UP000006548RefSeq:NP_565996.1scanprosite:PS00018SMART:SM00054
SMR:O22845STRING:3702.AT2G43290.1SUPFAM:SSF47473TAIR:AT2G43290
tair10-symbols:MSS3UniGene:At.21047UniProt:O22845
Coordinates (TAIR10) chr2:-:17991308..17991955
Molecular Weight (calculated) 24115.60 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.47
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRIFLLYNI LNSFLLSLVP KKLRTLFPLS WFDKTLHKNS PPSPSTMLPS PSSSSAPTKR IDPSELKRVF QMFDKNGDGR ITKEELNDSL ENLGIYIPDK
101: DLTQMIHKID ANGDGCVDID EFESLYSSIV DEHHNDGETE EEDMKDAFNV FDQDGDGFIT VEELKSVMAS LGLKQGKTLD GCKKMIMQVD ADGDGRVNYK
201: EFLQMMKGGG FSSSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)