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AT3G11650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NDR1/HIN1-like 2
Curator
Summary (TAIR10)
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent 'speck disease-like' symptom on leaves. The gene product is localized to the chloroplast
Computational
Description (TAIR10)
NDR1/HIN1-like 2 (NHL2); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 3 (TAIR:AT5G06320.1); Has 1008 Blast hits to 1007 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXCVeggNOG:ENOG410YGQVEMBL:AC009918EMBL:BT024621
EMBL:CP002686EnsemblPlants:AT3G11650EnsemblPlants:AT3G11650.1entrez:820337
GeneID:820337GO:GO:0004871GO:GO:0007165GO:GO:0009506
GO:GO:0009507GO:GO:0016021GO:GO:0046658GO:GO:0051607
Gramene:AT3G11650.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF4InterPro:IPR004864
KEGG:ath:AT3G11650OMA:CIFNCICPfam:PF03168PhylomeDB:Q9SRN1
Proteomes:UP000006548RefSeq:NP_566395.1STRING:3702.AT3G11650.1TAIR:AT3G11650
tair10-symbols:NHL2TMHMM:TMhelixUniGene:At.15769UniProt:Q9SRN1
Coordinates (TAIR10) chr3:-:3676264..3676986
Molecular Weight (calculated) 26766.30 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.04
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSKQPYLNG AYYGPSIPPP PKAHRSYNSP GFGCCCFSCL GSCLRCCGCC ILSLICNILI AVAVILGVAA LILWLIFRPN AVKFYVADAN LNRFSFDPNN
101: NLHYSLDLNF TIRNPNQRVG VYYDEFSVSG YYGDQRFGSA NVSSFYQGHK NTTVILTKIE GQNLVVLGDG ARTDLKDDEK SGIYRINAKL RLSVRFKFWF
201: IKSWKLKPKI KCDDLKIPLG SSNSTGGFKF QPVQCDFDLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)