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AT2G35930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plant U-box 23
Curator
Summary (TAIR10)
Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.
Computational
Description (TAIR10)
plant U-box 23 (PUB23); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 22 (TAIR:AT3G52450.1); Has 2501 Blast hits to 2466 proteins in 187 species: Archae - 0; Bacteria - 34; Metazoa - 243; Fungi - 89; Plants - 1910; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G35930-MONOMERBioGrid:3510BRENDA:6.3.2.19EC:6.3.2.-
eggNOG:ENOG410IRIFeggNOG:ENOG410YC1ZEMBL:AC007017EMBL:AK227343
EMBL:BT005829EMBL:CP002685EnsemblPlants:AT2G35930EnsemblPlants:AT2G35930.1
entrez:818166Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:818166
Genevisible:Q84TG3GO:GO:0004842GO:GO:0005829GO:GO:0006952
GO:GO:0009414GO:GO:0010200GO:GO:0016567GO:GO:0016874
GO:GO:0051865Gramene:AT2G35930.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF38
HOGENOM:HOG000238505InParanoid:Q84TG3IntAct:Q84TG3InterPro:IPR003613
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT2G35930
OMA:HILVNICPaxDb:Q84TG3Pfam:PF04078Pfam:PF04564
Pfam:Q84TG3Pfscan:PS51698PhylomeDB:Q84TG3PIR:G84774
PRIDE:Q84TG3PRO:PR:Q84TG3PROSITE:PS51698ProteinModelPortal:Q84TG3
Proteomes:UP000006548RefSeq:NP_181137.2SMART:SM00504SMR:Q84TG3
STRING:3702.AT2G35930.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT2G35930
tair10-symbols:PUB23UniGene:At.43241UniPathway:UPA00143UniProt:Q84TG3
Coordinates (TAIR10) chr2:-:15083101..15084336
Molecular Weight (calculated) 45825.30 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.04
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)