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AT5G64660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CYS, MET, PRO, and GLY protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CYS, MET, PRO, and GLY protein 2 (CMPG2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G09800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2694-MONOMEREC:6.3.2.-eggNOG:ENOG410II27eggNOG:ENOG410YF56
EMBL:AB010076EMBL:BT023419EMBL:BT025629EMBL:CP002688
EnsemblPlants:AT5G64660EnsemblPlants:AT5G64660.1entrez:836587Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:836587Genevisible:Q9FLF4GO:GO:0004842
GO:GO:0010200GO:GO:0016874Gramene:AT5G64660.1hmmpanther:PTHR22849
hmmpanther:PTHR22849:SF20HOGENOM:HOG000238505InParanoid:Q9FLF4InterPro:IPR003613
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT5G64660
OMA:GPTDEKGPaxDb:Q9FLF4Pfam:PF04564Pfam:Q9FLF4
Pfscan:PS51698PhylomeDB:Q9FLF4PRIDE:Q9FLF4PRO:PR:Q9FLF4
PROSITE:PS51698ProteinModelPortal:Q9FLF4Proteomes:UP000006548RefSeq:NP_201271.1
SMART:SM00504SMR:Q9FLF4STRING:3702.AT5G64660.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT5G64660tair10-symbols:ATCMPG2tair10-symbols:CMPG2
UniGene:At.19743UniGene:At.74061UniPathway:UPA00143UniProt:Q9FLF4
Coordinates (TAIR10) chr5:-:25842119..25843381
Molecular Weight (calculated) 46770.00 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.02
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)