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AT2G37430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: cotyledon, root, petiole; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G53600.1); Has 5065 Blast hits to 4182 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 4138; Fungi - 12; Plants - 806; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
DNASU:818319eggNOG:COG5048eggNOG:KOG1721EMBL:AB493580
EMBL:AC005896EMBL:CP002685EMBL:X98672EnsemblPlants:AT2G37430
EnsemblPlants:AT2G37430.1entrez:818319GeneID:818319Genevisible:Q9SLD4
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010200GO:GO:0046872GO:GO:0071289GO:GO:2000280
Gramene:AT2G37430.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF198HOGENOM:HOG000238452
InParanoid:Q9SLD4InterPro:IPR007087InterPro:IPR015880KEGG:ath:AT2G37430
OMA:HTESHTSPaxDb:Q9SLD4Pfam:PF13912Pfam:Q9SLD4
Pfscan:PS50157PhylomeDB:Q9SLD4PIR:F84792PRIDE:Q9SLD4
PRO:PR:Q9SLD4PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9SLD4
Proteomes:UP000006548RefSeq:NP_181279.1scanprosite:PS00028SMART:SM00355
SMR:Q9SLD4STRING:3702.AT2G37430.1SUPFAM:SSF57667TAIR:AT2G37430
UniGene:At.178UniProt:Q9SLD4
Coordinates (TAIR10) chr2:+:15706454..15706990
Molecular Weight (calculated) 20231.60 Da
IEP (calculated) 10.12
GRAVY (calculated) -0.50
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRERSDFEE SLKNIDIAKC LMILAQTSMV KQIGLNQHTE SHTSNQFECK TCNKRFSSFQ ALGGHRASHK KPKLTVEQKD VKHLSNDYKG NHFHKCSICS
101: QSFGTGQALG GHMRRHRSSM TVEPSFISPM IPSMPVLKRC GSSKRILSLD LNLTPLENDL EYIFGKTFVP KIDMKFVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)