AT1G07160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast, protein serine/threonine phosphatase complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1); Has 7376 Blast hits to 7203 proteins in 674 species: Archae - 10; Bacteria - 746; Metazoa - 1767; Fungi - 814; Plants - 2696; Viruses - 11; Other Eukaryotes - 1332 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2198155..2199678 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40711.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 380 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSVAVCNS PVFSPSSSLF CNKPLNTSPA HETLTLSLSH LNPPVSSTSP SAASPTSPFC LRLLKPPAKL GFGSDSGPGS ILKRKRPTTL DIPVAPVGIA 101: APISNADTPR EESRAVEREG DGYSVYCKRG KREAMEDRFS AITNLQGDPK QAIFGVYDGH GGPTAAEFAA KNLCSNILGE IVGGRNESKI EEAVKRGYLA 201: TDSEFLKEKN VKGGSCCVTA LISDGNLVVA NAGDCRAVLS VGGFAEALTS DHRPSRDDER NRIESSGGYV DTFNSVWRIQ GSLAVSRGIG DAHLKQWIIS 301: EPEINILRIN PQHEFLILAS DGLWDKVSNQ EAVDIARPFC KGTDQKRKPL LACKKLVDLS VSRGSLDDIS VMLIQLCHLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)