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AT4G25350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EXS (ERD1/XPR1/SYG1) family protein
Curator
Summary (TAIR10)
SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.
Computational
Description (TAIR10)
SHORT HYPOCOTYL UNDER BLUE1 (SHB1); CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2; Bacteria - 6; Metazoa - 265; Fungi - 425; Plants - 309; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5409eggNOG:KOG1162EMBL:AL079350EMBL:AL161563
EMBL:AY507956EMBL:CP002687EnsemblPlants:AT4G25350EnsemblPlants:AT4G25350.1
entrez:828638GeneID:828638Genevisible:Q6R8G6GO:GO:0005634
GO:GO:0005802GO:GO:0005829GO:GO:0005886GO:GO:0006817
GO:GO:0009960GO:GO:0010017GO:GO:0010468GO:GO:0016021
GO:GO:0045793GO:GO:0080050GO:GO:0080113Gramene:AT4G25350.1
hmmpanther:PTHR10783hmmpanther:PTHR10783:SF43HOGENOM:HOG000241861InParanoid:Q6R8G6
InterPro:IPR004331InterPro:IPR004342KEGG:ath:AT4G25350ncoils:Coil
OMA:WNITAWVPaxDb:Q6R8G6Pfam:PF03105Pfam:PF03124
Pfam:Q6R8G6Pfscan:PS51380Pfscan:PS51382PhylomeDB:Q6R8G6
PIR:T10214PRIDE:Q6R8G6PRO:PR:Q6R8G6PROSITE:PS51380
PROSITE:PS51382ProteinModelPortal:Q6R8G6Proteomes:UP000006548RefSeq:NP_194265.2
STRING:3702.AT4G25350.1TAIR:AT4G25350tair10-symbols:SHB1TMHMM:TMhelix
UniGene:At.49408UniProt:Q6R8G6
Coordinates (TAIR10) chr4:-:12963382..12966448
Molecular Weight (calculated) 86990.40 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.10
Length 745 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFGKEFVSQ MIPEWQEAYI DYAYLKTILQ DIQASRNRSD SNNQSSTPSF ARNLTRRYNR DALVSENHDI VVNTVTRLEE GLETAAYETT FLKAGEAGGD
101: FEVTFFRTLD REFNKVNNFY RLKVETARTE ALALNKQMDA LIAFRHKVMD QNQKNPSVFD SVSEDINGSA SEVGSSSKCT EHNVALADLM RNEDTSNESI
201: LERIRMNKTR EITPLSAIKT ILKVHKQDEL KFTRDNLKEV EKRLQVAFIE FYQKLRHLKN YSFLNASAVS KIMKKYDKIA KRNAAKLYME MVDKSFLSSS
301: EEVHKLLLKV ESIFIEHFSN SNRREGMSHL RPKINKERHL ITFSTGFFFG CGISLIVALG LIIHARNIMG TPGQRTYMET MFPLYRFFGF VVLHMDVYAA
401: NIYFWRRYRV NYSFIFGFKQ GTELGYRHVL LLSFGLGTLS LCAVLLNLDM EMDAQTKDYR LVTELIPLFL LVLVIIIVLC PFNILYRSSR FFFLSVLFRC
501: IAAPFYAVHL PDFFLGDQLT SQVQALRSLE FYICYYGFGD FRYRRRNTCT SNIGFRTFYF IVAVIPYWLR FLQCIRRMVE DRDLSHGYNG IKYLLTIVAA
601: SLRTAYTLNR GSNWNITAWV FSGVATFYGT YWDIVLDWGL LQRGCKNSFL RDKLLVPHKT VYYAAMVLNV LLRLVWLQTV LDLKFSFLHR ETMVALMACL
701: EIIRRGIWNF FRLENEHLNN VGRYRAFKTV PLPFNYEEDG DHHNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)