AT1G30755.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF668) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT1G34320.1); Has 465 Blast hits to 399 proteins in 71 species: Archae - 2; Bacteria - 14; Metazoa - 66; Fungi - 16; Plants - 336; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10905991..10908773 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69398.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||
| Length | 615 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGVCSCVFK DDDKKKKLRS NDDDKSRGFS GKLKSMRRSK TSDSYYSDNY GGSRRKSSKP DEVVFNFSGE LGPMPPLRND STKFMQRNSF MGRAGVMGLE 101: KAVEVLDTLG SSMTRMNPSN AYLSGVTSSR GGKVTILAFE VANTIAKGAA LLQSLSEENL KFMKKDMLHS EEVKKLVSTD TTELQILAAS DKREELDLFS 201: GEVIRFGNMC KDLQWHNLDR YFMKLDTENS QHKLLKDDAE ARMQELVTLA RITSELYHEL QALDRFEQDY RRKLAEVESL NLPRRGEGIV ILQNELKQQK 301: KLVKSLQKKS LWSQNLAEII EKLVDVVSYI RQTIVEVFGN NGLRDNEGEQ GRERLGEAGL SLHYANLIQQ IDNIASRPSS LPSNVRDTLY NALPATVKTA 401: LRPRLQTLDQ EEELSVPEIK AEMEKSLQWL VPFAENTTKA HQGFGWVGEW ANSRIEFGKG KGKGENNGNP TRLQTLHHAD KPIVDSYVLE LVVWLHRLMK 501: SSKKRAHGVK LQETNHVSPP NNRTISNTQL SLSPDFTYKN QLSLEDRLLL DRVQSIRFGP NLSKSQELVG LKKNKKGFKI WALSRSTGNS PKVDLSDKNS 601: SSDLDVLDGL DFAFQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)