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AT3G26500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 2
Curator
Summary (TAIR10)
Encodes PIRL2, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 2 (PIRL2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 3 (TAIR:AT1G12970.1); Has 88229 Blast hits to 35961 proteins in 1363 species: Archae - 28; Bacteria - 8944; Metazoa - 35427; Fungi - 2710; Plants - 36018; Viruses - 25; Other Eukaryotes - 5077 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AB028611EMBL:AK119000
EMBL:AY849572EMBL:BT006050EMBL:CP002686EnsemblPlants:AT3G26500
EnsemblPlants:AT3G26500.1entrez:822257Gene3D:3.80.10.10GeneID:822257
Gramene:AT3G26500.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF516HOGENOM:HOG000239210
InParanoid:Q9LRV8InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675
KEGG:ath:AT3G26500ncoils:CoilOMA:KYLDAHMPaxDb:Q9LRV8
Pfam:PF00560Pfam:PF13855Pfam:Q9LRV8Pfscan:PS51450
PhylomeDB:Q9LRV8PRIDE:Q9LRV8PRO:PR:Q9LRV8PROSITE:PS51450
ProteinModelPortal:Q9LRV8Proteomes:UP000006548RefSeq:NP_189281.2SMART:SM00369
SMR:Q9LRV8STRING:3702.AT3G26500.1SUPFAM:SSF52058TAIR:AT3G26500
tair10-symbols:PIRL2UniGene:At.37205UniProt:Q9LRV8
Coordinates (TAIR10) chr3:-:9708195..9709944
Molecular Weight (calculated) 52599.50 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.28
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHDLDKFPL LSYVLHQHDS NLHAPPSMAA QETLLPSFPL LSNPEIMSML TQSIPTTITQ TLFVFNSLGS RPDPLAVSSA RFKIAQIMDS LSPEEAAKES
101: EIYAGVVRLD EVHDSYEKKL KDTEEELSRV YSTEVESMLR SGEEVNEKVL AVLKEAESGG TVERIDLSSQ ELKLIPEAFW KVVGLVYLNL SGNDLTFIPD
201: AISKLKKLEE LDVSSNSLES LPDSIGMLLN LRILNVNANN LTALPESIAH CRSLVELDAS YNNLTSLPTN IGYGLQNLER LSIQLNKLRY FPGSISEMYN
301: LKYLDAHMNE IHGIPNSIGR LTKLEVLNLS SNFNNLMGVP DTITDLTNLR ELDLSNNQIQ AIPDSFYRLR KLEKLNLDQN PLEIPSQEVA TQGAEVVREF
401: MRKRWGDIMA EQQQRIGVEA ERHGDENGWV YWGTSMVTNL VSGVTHTIGF GGATSDGGDK KPGDSYFYHQ I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)