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AT5G48657.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.490
plasma membrane 0.374
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : defense protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
defense protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT3G07195.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUSDeggNOG:ENOG41106KPEMBL:CP002688EnsemblPlants:AT5G48657
EnsemblPlants:AT5G48657.1entrez:2746202ExpressionAtlas:F4K365GeneID:2746202
GO:GO:0016021Gramene:AT5G48657.1InParanoid:F4K365KEGG:ath:AT5G48657
OMA:FVILMEMPaxDb:F4K365PhylomeDB:F4K365PRIDE:F4K365
ProteinModelPortal:F4K365Proteomes:UP000006548RefSeq:NP_974909.1STRING:3702.AT5G48657.1
TAIR:AT5G48657TMHMM:TMhelixUniGene:At.21081UniProt:F4K365
Coordinates (TAIR10) chr5:-:19734019..19734845
Molecular Weight (calculated) 28209.70 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.68
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MNVANPNEYP DMNPNAAQNR NMSRPDQQPP NHNVRPRHER FNSRDETEFR PSPAHNERNN RVRSVPPTPE TYNHQTYGGG GRSMGNPTEI NRRQSRDHVP
101: ARPIRNLRGQ SSERVATIPP FPGTGSNMEN QSYTLIFDKV KEDRNQARSY NGTDHSTPTR PIIDQHHQPL PSSPKVDNQN IISLSFINPL FLQLTLLCVG
201: LLFSSMEPKG KLMKMIISLF YIILFFFICF CLIFFNNIFV ILMEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)