AT5G58940.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.559 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : calmodulin-binding receptor-like cytoplasmic kinase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNA | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
calmodulin-binding receptor-like cytoplasmic kinase 1 (CRCK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 2 (TAIR:AT4G00330.1); Has 122529 Blast hits to 121159 proteins in 4751 species: Archae - 123; Bacteria - 14655; Metazoa - 45015; Fungi - 10498; Plants - 33517; Viruses - 482; Other Eukaryotes - 18239 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:23798659..23800716 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52882.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPMRSKTPTP LRFSNGKHQR DDSEYSWTDV GTGEKARNVS VLGAIRRAAK KVFVIIFLGQ RKLKPTECRS DPGESSTHDR ESTLSGWTGY SSPSSFGRST 101: ERKVSGQYRF SGSRFQSPGK DSSSSKSWHQ GPVIFSFGEL QRATANFSSV HQIGEGGFGT VFKGKLDDGT IVAIKRARKN NYGKSWLLEF KNEIYTLSKI 201: EHMNLVKLYG FLEHGDEKVI VVEYVANGNL REHLDGLRGN RLEMAERLEI AIDVAHALTY LHTYTDSPII HRDIKASNIL ITNKLRAKVA DFGFARLVSE 301: DLGATHISTQ VKGSAGYVDP DYLRTFQLTD KSDVYSFGVL LVEILTGRRP IELKRPRKDR LTVKWALRRL KDDEAVLIMD PFLKRNRAAI EVAEKMLRLA 401: SECVTPTRAT RPAMKGIAEK LWAIRREMKE TMICSSASNS SCSSTTHSFI GRDSDRYALP RIEDNENSIE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)