AT3G16030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.993 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : lectin protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CALLUS EXPRESSION OF RBCS 101 (CES101); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT4G21390.1); Has 121576 Blast hits to 119500 proteins in 4422 species: Archae - 101; Bacteria - 13477; Metazoa - 44302; Fungi - 10440; Plants - 35232; Viruses - 450; Other Eukaryotes - 17574 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:5439609..5442802 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 96290.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 850 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MWSNCIFLTL FTFYLFLGQS CCQTDTLLQG QYLKDGQELV SAFNIFKLKF FNFENSSNWY LGIWYNNFYL SGAVWIANRN NPVLGRSGSL TVDSLGRLRI 101: LRGASSLLEL SSTETTGNTT LKLLDSGNLQ LQEMDSDGSM KRTLWQSFDY PTDTLLPGMK LGFNVKTGKR WELTSWLGDT LPASGSFVFG MDDNITNRLT 201: ILWLGNVYWA SGLWFKGGFS LEKLNTNGFI FSFVSTESEH YFMYSGDENY GGPLFPRIRI DQQGSLQKIN LDGVKKHVHC SPSVFGEELE YGCYQQNFRN 301: CVPARYKEVT GSWDCSPFGF GYTYTRKTYD LSYCSRFGYT FRETVSPSAE NGFVFNEIGR RLSSYDCYVK CLQNCSCVAY ASTNGDGTGC EIWNTDPTNE 401: NSASHHPRTI YIRIKGSKLA ATWLVVVASL FLIIPVTWLI IYLVLRKFKI KGTNFVSESL KMISSQSCSL TNKRLSTLRV GSTIDQEMLL LELGIERRRR 501: GKRSARNNNN ELQIFSFESV AFATDYFSDA NKLGEGGFGP VYKGRLIDGE EVAIKRLSLA SGQGLVEFKN EAMLIAKLQH TNLVKLLGCC VEKDEKMLIY 601: EYMPNKSLDY FLFDPLRKIV LDWKLRFRIM EGIIQGLLYL HKYSRLKVIH RDIKAGNILL DEDMNPKISD FGMARIFGAQ ESKANTKRVA GTFGYMSPEY 701: FREGLFSAKS DVFSFGVLML EIICGRKNNS FHHDSEGPLN LIVHVWNLFK ENRVREVIDP SLGDSAVENP QVLRCVQVAL LCVQQNADDR PSMLDVVSMI 801: YGDGNNALSL PKEPAFYDGP PRSSPEMEVE PPEMENVSAN RVTITVMEAR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)