suba logo
AT1G71520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22810.1); Has 4894 Blast hits to 4892 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4889; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J13YeggNOG:ENOG410YYQ2EMBL:AC016163EMBL:BT010999
EMBL:BT014816EMBL:CP002684EnsemblPlants:AT1G71520EnsemblPlants:AT1G71520.1
entrez:843492Gene3D:3.30.730.10GeneID:843492GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873
GO:GO:0010200Gramene:AT1G71520.1hmmpanther:PTHR31985hmmpanther:PTHR31985:SF3
HOGENOM:HOG000237624InParanoid:Q9C9I8InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G71520OMA:SVYDYLEPaxDb:Q9C9I8Pfam:PF00847
Pfam:Q9C9I8Pfscan:PS51032PhylomeDB:Q9C9I8PRINTS:PR00367
PRO:PR:Q9C9I8PROSITE:PS51032ProteinModelPortal:Q9C9I8Proteomes:UP000006548
RefSeq:NP_177307.1SMART:SM00380SMR:Q9C9I8STRING:3702.AT1G71520.1
SUPFAM:SSF54171TAIR:AT1G71520UniGene:At.35178UniGene:At.74074
UniProt:Q9C9I8
Coordinates (TAIR10) chr1:+:26938612..26939043
Molecular Weight (calculated) 15696.20 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.51
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSRDTGETD QSKYKGIRRR KWGKWVSEIR VPGTRQRLWL GSFSTAEGAA VAHDVAFYCL HRPSSLDDES FNFPHLLTTS LASNISPKSI QKAASDAGMA
101: VDAGFHGAVS GSGGCEERSS MANMEEEDKL SISVYDYLED DLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)