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AT3G26910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41100.1); Has 2609 Blast hits to 1522 proteins in 296 species: Archae - 0; Bacteria - 149; Metazoa - 565; Fungi - 402; Plants - 355; Viruses - 61; Other Eukaryotes - 1077 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZQBeggNOG:ENOG4111X4GEMBL:AY136351EMBL:BT000195
EMBL:CP002686EnsemblPlants:AT3G26910EnsemblPlants:AT3G26910.1entrez:822307
ExpressionAtlas:Q8L7B9GeneID:822307Gramene:AT3G26910.1hmmpanther:PTHR34119
hmmpanther:PTHR34119:SF1HOGENOM:HOG000239103IntAct:Q8L7B9PhylomeDB:Q8L7B9
Proteomes:UP000006548RefSeq:NP_189326.2STRING:3702.AT3G26910.2SUPFAM:SSF103657
TAIR:AT3G26910UniGene:At.37141UniProt:Q8L7B9
Coordinates (TAIR10) chr3:-:9915338..9918511
Molecular Weight (calculated) 67591.40 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.75
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MKASIEKLRR LTSHSHKVDV KEKGDVMATT QIDELDRAGK DMQDMRECYD RLLAAAAATA NSAYEFSESL GEMGSCLEQI APHNDEESSR ILFMLGKVQS
101: ELQRLLDTYR SHIFETITSP SEALLKDLRY VEDMKQQCDG KRNVYEMSLV KEKGRPKSSK GERHIPPESR PAYSEFHDEA TMCIFRLKSL KEGQARSLLI
201: QAVRHHTAQM RLFHTGLKSL EAVERHVKVA VEKQHIDCDL SVHGNEMEAS EDDDDDGRYM NREGELSFDY RTNEQKVEAS SLSTPWATKM DDTDLSFPRP
301: STTRPAAVNA DHREEYPVST RDKYLSSHSA PLFPEKKPDV SERLRQANPS FNAYVLPTPN DSRYSKPVSQ ALNPRPTNHS AGNIWHSSPL EPIKSGKDGK
401: DAESNSFYGR LPRPSTTDTH HHQQQAAGRH AFSGPLRPSS TKPITMADSY SGAFCPLPTP PVLQSHPHSS SSPRVSPTAS PPPASSPRLN ELHELPRPPG
501: HFAPPPRRAK SPGLVGHSAP LTAWNQERST VTVAVPSATN IVASPLPVPP LVVPRSYSIP SRNQRVVSQR LVERRDDIVA SPPLTPMSLS RPLPQATGVA
601: QTSQIRGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)