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AT4G09100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21515817 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC005359EMBL:AL161514
EMBL:BT024815EMBL:CP002687EMBL:DQ059117EnsemblPlants:AT4G09100
EnsemblPlants:AT4G09100.1entrez:826488Gene3D:3.30.40.10GeneID:826488
Genevisible:Q9M0R7GO:GO:0008270GO:GO:0016021GO:GO:0016567
Gramene:AT4G09100.1hmmpanther:PTHR14155HOGENOM:HOG000237642InParanoid:Q9M0R7
InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT4G09100OMA:IGELECV
PaxDb:Q9M0R7Pfam:PF13639Pfam:Q9M0R7Pfscan:PS50089
PhylomeDB:Q9M0R7PIR:B85092PRIDE:Q9M0R7PRO:PR:Q9M0R7
PROSITE:PS50089ProteinModelPortal:Q9M0R7Proteomes:UP000006548RefSeq:NP_192649.1
SMART:SM00184SMART:SM00744SMR:Q9M0R7STRING:3702.AT4G09100.1
SUPFAM:SSF57850TAIR:AT4G09100TMHMM:TMhelixUniGene:At.54223
UniPathway:UPA00143UniProt:Q9M0R7
Coordinates (TAIR10) chr4:+:5811256..5811654
Molecular Weight (calculated) 14893.00 Da
IEP (calculated) 7.27
GRAVY (calculated) 0.04
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYFKRNEGT IVFAFASIGF IAFYIINYYI RRCRNRAAAA GDIEEARMSP RRPPRGLDAE AIKSFPSFVY TEARGIEPGI GELECVVCLN EFKDDETLRL
101: VPPCVHVFHA DCVDIWLSHS STCPICRAKV VP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)