AT1G76320.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.984 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : FAR1-related sequence 4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FAR1-related sequence 4 (FRS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 1570 Blast hits to 1410 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 91; Plants - 1475; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:28631404..28633886 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85155.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 732 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA 101: HYFRSHRNTE LVKSNDSRLR RKKNTPLTDC KHLSAYHDLD FIDGYMRNQH DKGRRLVLDT GDAEILLEFL MRMQEENPKF FFAVDFSEDH LLRNVFWVDA 201: KGIEDYKSFS DVVSFETSYF VSKYKVPLVL FVGVNHHVQP VLLGCGLLAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NAIKAAIAAV LPETRHCYCL 301: WHVLDQLPRN LDYWSMWQDT FMKKLFKCIY RSWSEEEFDR RWLKLIDKFH LRDVPWMRSL YEERKFWAPT FMRGITFAGL SMRCRSESVN SLFDRYVHPE 401: TSLKEFLEGY GLMLEDRYEE EAKADFDAWH EAPELKSPSP FEKQMLLVYS HEIFRRFQLE VLGAAACHLT KESEEGTTYS VKDFDDEQKY LVDWDEFKSD 501: IYCSCRSFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT NAARNRHQIS RNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAV 601: TINTIKHPAR CEEAAIQAGD PVQEENQYGS TSTQIGPEPN IHAGNVPWQA ETRREKRSSL NNTSKKAKHV AQSETVGEGS QEGFQHVADP RQSQAVLAGQ 701: FHNTMPGVFQ NLINTNFQNI PATNMHQNNP PG |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)