AT1G22860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar sorting protein 39 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vacuolar sorting protein 39; FUNCTIONS IN: small GTPase regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Citron-like (InterPro:IPR001180), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (InterPro:IPR019452), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (InterPro:IPR019453); Has 401 Blast hits to 372 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 168; Fungi - 105; Plants - 74; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8083400..8088867 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107342.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.22 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 961 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKSRAVVEL TARFDLGGDD KIRALSLSPI SDSQTLVYLG TYSGSLILLS LDTLTNTVSR LASVSLSPSP VESIFVLGEE RGRVLALCNG YLFLLDSLLS 101: QPAKRLGGLL KGINVIAKRV RGRDSSSTDL LPSEISTDSS SSKKFLQLLG AGNLVSDVRG NDSRHERVQQ GHYVFAVAIG ERMLLIELQC AEKEGLSGSF 201: VVLKEILGIG GIKTLVWLDD YVIAGTVKGY SLISCVTGLS GVIFTLPDVS GPPLLKLLCK EWKVLLLVDN VGVVVDTNGQ PIGGSLVFRR RPDSVGELSF 301: YLVTVGDGKM EIHQKKSGAC VQSVSFGPQG CGPSLLAADE AGDGNLLVVT TLSKLIFYRR VPYEEQIKDL LRKKRYRETI SLVEELDSQG EISKDMLSFL 401: HAQIGYLLLF DLRFEEAVNQ FLKSEKMEPS EVFPFIMRDP NRWSLVVPRN RYWGLHPPPA PFEDVVDNGL MAIQRANFLR KAGMDTPVDE EFFSDPPSRA 501: DLLDSAIKNI TRYLEISREK GLTLPVREGI DTLLMLLYRA LNRVEDMENL ASSGNNCVVE ELETLLTESG HLRTLAFLYA TKGMGAKALA IWRLFTKNYS 601: SGLWQDSDDL VPYLHDNELI RLSGKEAAAA EAARILEEPC DPELALQHLS WIADVNPLFA IQVLTSDKRT EELSPEQVIQ AIDPKKVEII QRYFQWLIEE 701: RDYTDPQLHT SYALSLARSA LECVEVQNGI QEADVPNGSE AHDSNVGSIS LFEVDVRERL QAFLQSSDLY DPEEILELVE GSELWLEKAI LYRRIGKETL 801: VLQILALLLD MYLDPQNGKE PMFKAAVRLL HNHGESLDPL QVLDKLSPDM PLKLASDTIL RMLRARVHHH RQGQIVHNIS RALDVDSRLA RLEERSRHMQ 901: INDESLCDSC YARLGTKLFA MYPDDTIVCY KCYRRLGESK SVTGRDFKRD VLIKPGWLVN R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)