AT3G45630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16748751..16753190 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108443.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 989 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDYGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI MDMAEKDQSE GRCPACRTPY DKEKIVGMTV DQERLASEGN MDRKKIQKSK PKSSDGRKPL 101: TSVRVVQRNL VYIVGLPLNL ADEDLLQRKE YFGQYGKVLK VSMSRTATGL IQQFPNNTCS VYITYGKEEE AIRCIQSVHG FILDGKALKA CFGTTKYCHA 201: WLRNVACNNQ DCLYLHEVGS QEDSFTKDEI ISAHTRVQQI TGATNTMQYR SGSMLPPPLD AYTSDSSTGN PIAKVPSSTS VSAPKSSPPS GSSGKSTALP 301: AAASWGARLT NQHSLATSAL SNGSLDNQRS TSENGTLATS TVVTKAANGP VSSSNSLQKA PLKEEIQSLA EKSKPGVLKP LQQKIVLDPE SKRTTSPNRD 401: PSSNQISCLV ESSYNSRVID KPSAVENSLE HTSEIAEDVF DVGKLSADVA WMGITTNSRD ETPGVPVVIG THCDLGSITQ SDNDVQNLEQ CRKQSPTNTY 501: AEADISLNGI HGSRPEWDWR SGLQSQIDVK EPLEVNDFSS FNNNRRGIAE AVSHSTSKFS SSISILDSNH LASRSFQNRE TSCGMDSKTG SSFEIGSDRL 601: HLPNGFSEKA MSNMEHSLFA NEGRSNIQNT EDDIISNILD FDPWDESLTS QHNFAKLLGQ SDHRASTLES SNLLKQHNDQ SRFSFARHEE SNSQAYDNRS 701: YSIYGQLSRD QPLQEFGANR DMYQDKLGSQ NGFASNYSGG YEQFATSPGL SSYKSPVART QVSAPPGFSA PNRLPPPGFS SHQRGDLSSD IASGTRLLDS 801: ANLLRNAYHV PPPSGNLNAA GDIEFIDPAI LAVGRGRLHN GMETADFDLR SGFSSQLNSF DNDARLQLLA QRSLAAQQVN GFHDPRNVNN FSSSFSDPYG 901: ISSRPTDQTQ GTGLSPFTQL PRQASANPLL SNGHWDNKWN EPQSGNNLGI TQLLRNERMG FNDNVYSGFE EPKFRRPGPG DPYNRTYGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)