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AT2G22530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alkaline-phosphatase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alkaline-phosphatase-like family protein; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: metabolic process, phospholipid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT5G17250.1); Has 1578 Blast hits to 1403 proteins in 374 species: Archae - 4; Bacteria - 326; Metazoa - 515; Fungi - 456; Plants - 91; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1524eggNOG:KOG2125EMBL:CP002685EnsemblPlants:AT2G22530
EnsemblPlants:AT2G22530.1entrez:816786Gene3D:3.40.720.10GeneID:816786
GO:GO:0003824GO:GO:0005783GO:GO:0016021Gramene:AT2G22530.1
hmmpanther:PTHR23072hmmpanther:PTHR23072:SF0InParanoid:F4IJJ8InterPro:IPR002591
InterPro:IPR017849InterPro:IPR017850KEGG:ath:AT2G22530KO:K05310
OMA:NVGHTEQPaxDb:F4IJJ8Pfam:PF01663PRIDE:F4IJJ8
ProteinModelPortal:F4IJJ8Proteomes:UP000006548Reactome:R-ATH-162710RefSeq:NP_179839.5
STRING:3702.AT2G22530.1SUPFAM:SSF53649TAIR:AT2G22530TMHMM:TMhelix
UniGene:At.39423UniProt:F4IJJ8
Coordinates (TAIR10) chr2:-:9572971..9577441
Molecular Weight (calculated) 106153.00 Da
IEP (calculated) 7.21
GRAVY (calculated) 0.36
Length 958 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTAAMTCTR LTIFTVAGIL LQIIGLSIFV FGFFPVKPTL SGVSGSESYR DPFCDSSLIS NESELHHPEK LRLLYQELSG ISSKYDRLIL MVIDGLPAEF
101: VLGKDGKPPE KVLKESMPYT QSLLANGDAI GYHAKAAPPT VTMPRLKAMV SGAIGGFLDV AFNFNTQALL DDNILGQFFR IGWKMVMLGD ETWLKLFPGL
201: FMRHDGVSSF FVKDTVQVDR NVSRHLPDEL NSDDWNLLIL HYLGLDHVGH TGGRNSPLMP AKLKEMDDIV RTMHLRAMMD RSHDQGQTLL IIVSDHGMTE
301: NGNHGGSSYE ETDSLMLFIG LNSNISDYAS ATNNVAFQVD LAPTLALLFG VPIPKNNVGV LVPGTLCSLR DFEQLRALEL NSWQLLRLML AQIQSSSFPR
401: VSCNCFLDGT CEGLDLDISE CSGDKEKQLI CLFRNAAALH GIWKSKKSTE SSSTMEDFSR ALDAYNTFLK TASEWLASKT TEKPVLLLGL GVSAMLLSCF
501: ICGTVFLSLF KEVYHEPKDR VCSLSNLLNL EEVFIFALLL ILVISMGSSS MVEEEHYIWH FMVSTFHLLL LFKTAKSFKI SKGMNILRDF KFGSIFSLLI
601: SGRLLRGWHQ GGVNWTYLPD ISKWLVQGGS GYVKWIQLIS IILVIGLGLY TLFRTGSNRK GVRILAFGFS TCGFLVLLHV GRYQDELSTG FGATVTVKVI
701: YYLLSISSIG ASLVLPWSAL NKDKSFLAEV GDCLYLIGSA YILCWCLLQQ LLQQPINSGP ILLLLLQILA ILCLSSSDFQ VNEWVEITAL YYMGMAGHFA
801: LGNSNTLATI DVAGAFIGIS SHSTILSGIL MFMITYASPM LFLLSLVMYI GANLRNHSNS TISTHRETSL GQILKLKLGF PCLVPLCINS ILLTAYTVVL
901: LLMRNHLFVW SVFSPKYLYV CATTLCTYIG VCIVAATVTY TFYVTTFLRS NRTRHNNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)