AT2G25420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.807 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WUS-interacting protein 2 (TAIR:AT3G15880.1); Has 3410 Blast hits to 2683 proteins in 316 species: Archae - 2; Bacteria - 469; Metazoa - 1038; Fungi - 599; Plants - 625; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:10817017..10820919 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83164.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 740 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF 101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL 201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA 301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS 401: GDYILALAED ATHKLWTWSS SQNEFCKENV YPKPRLHQPQ SGKTMENEMA TSVQKSTSCF AVKGSYLFST SGGKIAVFDL KNFEKVASFG SPTPMATYFI 501: FIPGDLLAVG LDDGSIFIHC LSSRKVKEKL EGHDQKITCL AFSRCFNVLV SSDSDGKLCL WSTKSWVKLT SKNSTRKFCN RSNLESTSLV THIQFDPYQI 601: ELLVVHDGWI GLYEVRTLDC RLQWIPDASD PAITSATYSS DGEIIYVGFR CGSIKIVDSK TFMTLCQINL TSFTQLSTSN ISLEVYPTVV AAHPSHPNQI 701: SAGLSNGKVI VLQPLWSGGW GEAAPLEDNG DYSNDSDHSY |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)