AT5G12440.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CCCH-type zinc fingerfamily protein with RNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2); Has 264 Blast hits to 227 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 228; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:4035891..4038604 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 71963.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 650 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSGDATSLL LTKIRSLEPD YAPKIIGYLL LHDFGDRDLM HLARGPESIL QSTISKVKSL LGIFSNNSPS STPTSPSPLN PICRPPLNGR GSSHSNGFMD 101: FRRNSPSSPS STSPWSFNNC INGNNGNNPH ISPKHTPISK PFSSHQSNGL SATHSGSADA AGGADLLDDQ QLNDCLSFLD DSCSKTEDLV DPSIPLDYSV 201: DGDGETHLHR RSFSCDASFV SGDDGFGGGC KPCVYFSRGL CKNGESCKFI HGGYPDNMDG NGIVADSPRK MENFVRQHEE MMRLKLAYQQ QRLASQILGR 301: APQLPYEKRM DFLLQQHAQR DGGLPFGDER FWSSSPGRLE RMELAMHLGD QSNSASRQIY LTFPADSTFK DEDVATYFSL FGTVQDVRIP YQQKRMFGFV 401: SFAHPETVKV VLARGNPHFI CDSRVLVKPY KEKGKVLDKK QQQLLQQQIE RGNYSPCSSP SGIDPREQSD FHLGSKMLYE RREMMRRKIE QADLLRAIEL 501: ERRRFINLQL PEFKNSVTLN HHRSFSVGSP GYFSSAGNQS PDFQSELNGA DALKVTDDTL ELHPYPVVNP MSVNNSYSNG AKEETNKSEL LDPDSGSTIE 601: LVLPSNLFPS ASSTDDHKTD DSAETNAKVG VSSTNENDHE PPVTTNNLMQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)