suba logo
AT5G12440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCCH-type zinc fingerfamily protein with RNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2); Has 264 Blast hits to 227 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 228; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IS89eggNOG:ENOG411182HEMBL:AK119121EMBL:AL592312
EMBL:BT002509EMBL:CP002688EnsemblPlants:AT5G12440EnsemblPlants:AT5G12440.1
EnsemblPlants:AT5G12440.2EnsemblPlants:AT5G12440.3entrez:831119Gene3D:3.30.70.330
GeneID:831119Genevisible:Q94CJ8GO:GO:0000166GO:GO:0003677
GO:GO:0003723GO:GO:0046872Gramene:AT5G12440.1Gramene:AT5G12440.2
Gramene:AT5G12440.3hmmpanther:PTHR24009hmmpanther:PTHR24009:SF3HOGENOM:HOG000242520
InParanoid:Q94CJ8InterPro:IPR000504InterPro:IPR000571InterPro:IPR012677
iPTMnet:Q94CJ8KEGG:ath:AT5G12440ncoils:CoilOMA:MLYERRE
PaxDb:Q94CJ8Pfam:PF00076Pfam:PF00642Pfam:PF13893
Pfam:Q94CJ8Pfscan:PS50102Pfscan:PS50103PRIDE:Q94CJ8
PRO:PR:Q94CJ8PROSITE:PS50102PROSITE:PS50103ProteinModelPortal:Q94CJ8
Proteomes:UP000006548RefSeq:NP_001190296.1RefSeq:NP_001190297.1RefSeq:NP_568277.5
SMART:SM00360STRING:3702.AT5G12440.1SUPFAM:SSF54928TAIR:AT5G12440
UniGene:At.32141UniProt:Q94CJ8
Coordinates (TAIR10) chr5:-:4035891..4038604
Molecular Weight (calculated) 71963.90 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.65
Length 650 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGDATSLL LTKIRSLEPD YAPKIIGYLL LHDFGDRDLM HLARGPESIL QSTISKVKSL LGIFSNNSPS STPTSPSPLN PICRPPLNGR GSSHSNGFMD
101: FRRNSPSSPS STSPWSFNNC INGNNGNNPH ISPKHTPISK PFSSHQSNGL SATHSGSADA AGGADLLDDQ QLNDCLSFLD DSCSKTEDLV DPSIPLDYSV
201: DGDGETHLHR RSFSCDASFV SGDDGFGGGC KPCVYFSRGL CKNGESCKFI HGGYPDNMDG NGIVADSPRK MENFVRQHEE MMRLKLAYQQ QRLASQILGR
301: APQLPYEKRM DFLLQQHAQR DGGLPFGDER FWSSSPGRLE RMELAMHLGD QSNSASRQIY LTFPADSTFK DEDVATYFSL FGTVQDVRIP YQQKRMFGFV
401: SFAHPETVKV VLARGNPHFI CDSRVLVKPY KEKGKVLDKK QQQLLQQQIE RGNYSPCSSP SGIDPREQSD FHLGSKMLYE RREMMRRKIE QADLLRAIEL
501: ERRRFINLQL PEFKNSVTLN HHRSFSVGSP GYFSSAGNQS PDFQSELNGA DALKVTDDTL ELHPYPVVNP MSVNNSYSNG AKEETNKSEL LDPDSGSTIE
601: LVLPSNLFPS ASSTDDHKTD DSAETNAKVG VSSTNENDHE PPVTTNNLMQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)