AT5G67570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DELAYED GREENING 1 (DG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast organization, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G30610.2); Has 18472 Blast hits to 7295 proteins in 194 species: Archae - 0; Bacteria - 17; Metazoa - 30; Fungi - 92; Plants - 17734; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26952352..26955480 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92063.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 798 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDASVVRFSQ SPARVPPEFE PDMEKIKRRL LKYGVDPTPK ILNNLRKKEI QKHNRRTKRE TESEAEVYTE AQKQSMEEEA RFQTLRREYK QFTRSISGKR 101: GGDVGLMVGN PWEGIERVKL KELVSGVRRE EVSAGELKKE NLKELKKILE KDLRWVLDDD VDVEEFDLDK EFDPAKRWRN EGEAVRVLVD RLSGREINEK 201: HWKFVRMMNQ SGLQFTEDQM LKIVDRLGRK QSWKQASAVV HWVYSDKKRK HLRSRFVYTK LLSVLGFARR PQEALQIFNQ MLGDRQLYPD MAAYHCIAVT 301: LGQAGLLKEL LKVIERMRQK PTKLTKNLRQ KNWDPVLEPD LVVYNAILNA CVPTLQWKAV SWVFVELRKN GLRPNGATYG LAMEVMLESG KFDRVHDFFR 401: KMKSSGEAPK AITYKVLVRA LWREGKIEEA VEAVRDMEQK GVIGTGSVYY ELACCLCNNG RWCDAMLEVG RMKRLENCRP LEITFTGLIA ASLNGGHVDD 501: CMAIFQYMKD KCDPNIGTAN MMLKVYGRND MFSEAKELFE EIVSRKETHL VPNEYTYSFM LEASARSLQW EYFEHVYQTM VLSGYQMDQT KHASMLIEAS 601: RAGKWSLLEH AFDAVLEDGE IPHPLFFTEL LCHATAKGDF QRAITLINTV ALASFQISEE EWTDLFEEHQ DWLTQDNLHK LSDHLIECDY VSEPTVSNLS 701: KSLKSRCGSS SSSAQPLLAV DVTTQSQGEK PEEDLLLQDT TMEDDNSANG EAWEFTETEL ETLGLEELEI DDDEESSDSD SLSVYDILKE WEESSKKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)