AT2G47220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.854 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 5 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 5 (DUF5); FUNCTIONS IN: 3'-5'-exoribonuclease activity, oxidoreductase activity, RNA binding; INVOLVED IN: metabolic process, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: lateral root emergence; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein of unknown function DUF724 (InterPro:IPR007930), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 2 (TAIR:AT1G11420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19384059..19386472 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52405.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 469 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPMTLTPSA MGLWLVPNHV SVKIPFGNRE ILVETGLMGR QASSAVTVTD GETIVFTSVC LADVPSEPSD FLPLYVHYQE RFSAVGRTSG GFFKREGRTK 101: DHEVTFLCLP AASYITGQEE LKACLNDWKS NGLVVSGLVR DQREKLIQEV SSTFSGKLNI LSPLAQGSGN NMGGSVMNGN TPPSLDSNES VSPVTSSPVI 201: TSTPLEHTEA GTKGKTVPKK TLQPMEMNQL ERSEDNSRKR KRGELEHNSD LNETVLPSDW TPDPVKNFAA DDDDEETKAK DATMVLPFVK KSPVWKIYES 301: MEVFKRVPQS PHFSPLFEAK EDFREGFALG MMVTFSGVLE KVEDLKTDVP IRQLNSLKDS FTELEKHGFT VTAPLSRIAK LLALKDRQLK ILEELKVFDK 401: EMKDESSKKH KAEQEFGEME RKILEVKNKV LELQKQEAAL EKQKDATYEK ICKMESRARD LGVELEDVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)